SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10092

Length: 679 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10092

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20389	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	81%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	81%
Blast2go	post-embryonic development	GO:0009791	Biological Process	81%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	81%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
24	66		33		0.997452
27			33	66	0.997452
28			66	33	0.997452
31		33		66	0.997452
32		33	66		0.997452
33			66	33	0.997452
36		66	33		0.997452
39			33	66	0.997452
40	66			33	0.997452
41		33		66	0.997452
42	33			66	0.997452
46		33		66	0.997452
47	33			66	0.997452
147	83		16		0.994512
151	83		16		0.994512
153			16	83	0.994512
158	83			16	0.994512
159			16	83	0.994512
160			16	83	0.994512
161		16		83	0.994512
166	83	16			0.994512
169	16	83			0.994512
257		83	16		0.994512
258	83			16	0.994512
259	83	16			0.994512
261	83			16	0.994512
263	16			83	0.994512
264	83	16			0.994512
265		16	83		0.994512
269		33	16		1.0
270			16	50	1.0
273	83		16		0.994512
274			83	16	0.994512
275		16	83		0.994512
277		16	83		0.994512
279	16			83	0.994512
323		12		87	0.992554
325		87		12	0.992554
326		12		87	0.992554
328	87			12	0.992554
331		12		87	0.992554
332	87	12			0.992554
333		87		12	0.992554
334	87			12	0.992554
336		87	12		0.992554
337	87	12			0.992554
338	87			12	0.992554
340		87		12	0.992554
346	87			12	0.992554
350	87			12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
168	185	CAAAGT CAAAGT CAAAGT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain