SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10083

Length: 1331 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10083

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1530	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide chain release factor 1 [Arabidopsis thaliana] gb\|ABN04796.1\| At2g47020 [Arabidopsis thaliana] gb\|AEC10789.1\| Peptide chain release factor 1 [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	87%
Blast2go	peptide chain release factor 1	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	translational termination	GO:0006415	Biological Process	82%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	82%
Blast2go	translation release factor activity, codon specific	GO:0016149	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Amidase	IPR000120	-	-
Sma3	Peptide chain release factor class I/class II	IPR000352	-	-
Sma3	Peptide chain release factor 1	IPR004373	-	-
Sma3	Peptide chain release factor	IPR005139	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U2V2

Fln msg: Overlapping hits, possible frame ERROR between 349 and 321, your sequence is shorter than subject: 203 - 392

Fln protein: VVTLAVTQGSGVYGKLKFESGVHRVQRVPVTEKSGRIHTSAASVAILPQADEVDVQLRNEDLRIDTYRSGGAGGQHVNTTSSAVRVTHIPTGIVITIQDERSQHKNxxxxxxxxxxxKLYEMERQRLHSSRSKLRSEQIGSGDRSERIRTYNYPQGRVTDHRVGITYHSIEDIVQGESLDIFFDALILKQEMDAISSFSDTS*

Protein Length: 204

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTCGGGTGTTTATGGAAAGCTTAAATTTGAAAGTGGTGTGCATCGTGTGCAGCGTGTTCCAGTTACAGAAAAATCAGGTCGCATCCATACTAGTGCTGCATCTGTTGCCATTCTTCCTCAGGCTGATGAGGTTGATGTGCAATTGCGCAATGAGGATTTGAGAATTGATACTTATCGATCAGGTGGAGCAGGAGGTCAACATGTAAATACAACGAGCAGTGCTGTTCGTGTCACTCACATTCCAACAGGCATTGTCATAACCATTCAAGATGAGCGATCACAACACAAGAACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAACTTTATGAAATGGAAAGACAGAGACTCCATTCCAGCCGGTCTAAGCTCCGTTCTGAACAAATTGGCAGTGGAGACAGGTCAGAGCGGATCCGGACATATAATTATCCCCAAGGCCGGGTAACTGATCATAGAGTTGGGATAACTTATCATTCGATAGAAGATATCGTGCAGGGTGAAAGCTTGGATATTTTCTTCGATGCTCTTATTCTGAAACAGGAAATGGATGCAATTTCTTCGTTCAGTGATACCTCCTGATATTGCAATTGTTTCTTGGAATCATCAGAAATGGTCTTATTACATCCGGGTTTTTAAACAAGTGATAGATATGGTGCACAGCAGACCTATGTTAAACAGATTGTATGGGTCAATTTCTGAGGCGCAGAAAATGTCTTTCATTGTAAGTACCATTGCATTGATCATTAAATATGTCTTCTAGTCTTTAGATTAGGTTAATCTCCCATGAAAATATTATGCCAGTTGAGAGTCGAGACACTGCAAGTTTTCTTAGACCAGCATTGTTAAATTGCGTATCTCATAGGTGAGTTGTCGATACCAGTTACAACTCTATTCTTACTTTGTATGAGCATATGGATAGTTAGTTGAACTTGTTATTGTAACTTTGCTTTCTTCATGTCATGGACAAGAAAACAGATGGTTCATGTACAAACTGGAAATGTCAGAGGCCTTGAATGTTCCAGTCTGCCAGGAACAATGAAAAAATACCACGTTTCTCCATGCACTTGTGTCTAATTTGCATGATAAATGCAACTGTTGCAAGTTTATGCTTTTTCACCATATTATTGTAACTGGCTCTGTTACTGGAAACTTGACCCCAAGGAGCTGGAAACGAGTTTTGAAAATGTTTCATCATCCGAAATGGTTGAAATGATTCAGTGGCTGTTCAGATGTTCAAAATGTTGTATTGACCTTTTCAACCACTGTTTTGGCCAGCGGATTGGCCGTTTCAGCAGGCATTTG

Fln Alignment:

Contig10083___GSGVYGKLKFESGVHRVQRVPVTEKSGRIHTSAASVAILPQADEVDVQLRNEDLRIDTYRSGGAGGQHVNTTSSAVRVTHIPTGIVITIQDERSQHKNxxxxxxxxxxKLYEMERQRLHSSRSKLRSEQIGSGDRSERIRTYNYPQGRVTDHRVGITYHSIEDIVQGESLDIFFDALILKQEMDAISSF
D7U2V2________________GSGVYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRITHIPSGMTVAIQDERSQHMNxxxxxxxxxxKLYEIERSRIQKDRSKLRMEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSVNDVMQGENLDVFIDALLLQQEMDAIASF

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
647		33		66	0.997452
648	66		33		0.997452
650			25	75	0.996473
653	75	25			0.996473
655		75		25	0.996473
656		75	25		0.996473
659			75	25	0.996473
664		25		75	0.996473
666		25		75	0.996473
667	25			75	0.996473
736	25		75		0.996473
755	25		75		0.996473
790			16	83	0.994512
793			16	83	0.994512
794	83			16	0.994512
796	16			83	0.994512
798		16		83	0.994512
801	83		16		0.994512
803	83	16			0.994512
807		16	83		0.994512
808			83	16	0.994512
809		16		83	0.994512
810	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain