SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10056

Length: 1230 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10056

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11832	25/27

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin d, putative n=1 Tax=Ricinus communis RepID=B9SG00_RICCO	-	-	2.0e-25	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	cyclin d3-2	-	-	2.23947e-31	60%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin D	IPR015451	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR95

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 207 - 368

Fln protein: VVTLAVTHVFENGGLILCLQVGEAEHVFEPRTIQRMELLLLSALKWRMKAVTPLSYLQYGGHILGLEKQFHGEFIMRSSELAFCTINETRLLKFMPSVIAAAIMLWVAREMEVINLNECEDRLLSRLKVAKGPLQCCYQLLQVSFGQAHVRKRKVCSSLSKPDSPHRVLDAAFSFSTEHSQKSSAKYTVSSPSSSPSVPNKRRITE*

Protein Length: 208

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTTTGAAAATGGCGGTCTTATTTTGTGTTTGCAGGTAGGGGAAGCTGAACATGTTTTCGAACCTCGAACTATTCAAAGAATGGAGCTGCTTTTACTGAGTGCACTGAAATGGCGGATGAAGGCAGTGACTCCTCTTTCATATTTGCAATATGGTGGCCACATATTAGGTTTAGAGAAGCAGTTTCATGGAGAGTTTATAATGCGATCTTCTGAGCTTGCTTTCTGCACTATTAATGAGACCAGGCTTTTGAAGTTTATGCCATCTGTAATAGCTGCTGCCATTATGCTATGGGTGGCAAGGGAAATGGAAGTTATAAATCTCAATGAATGCGAGGATCGCTTGCTTTCTCGTTTAAAAGTGGCAAAGGGACCGTTGCAATGCTGTTATCAATTGTTGCAGGTATCGTTTGGCCAGGCTCATGTCCGAAAGCGAAAGGTGTGCAGCAGCCTTTCCAAGCCTGATAGTCCTCATAGGGTTCTGGACGCAGCTTTTAGCTTTAGTACTGAACATTCTCAGAAGTCATCAGCTAAATATACAGTTAGCAGTCCCAGTTCTTCCCCATCTGTACCCAATAAAAGGAGGATTACAGAGTGA___TTCCTTTCACGCTGAAACACAAAACCCCCTACCATATCATAAGCATGGAAGCCGTAAAGACCTAGGCTGGCACTAATTCTATGAATAAAGGAGTTTGACCTATCAAATTTTTTATGCTGTAGATCAGTGACAATGACAGCCTTTCTATCTTGGTCTGTCAGCTGGAAAGGGACAGTAAGTAAATCATAATTTGTGATGTGGACATTGGAAGCTGCTATATTGACATTGCTATGTAGTGATGGTGCTTGGGAAGAATAATTATCTACACACAGGTTTCGATAAATCGCGGTAGCAGGTTTGAAAACAGGGCGATGCAGGCGACATTTTGGCACTATTGTCGGCCATATCTTTTCTCAGTCCCTTTCGAGTGCCAGAAACTTTTTTCGATGCTTAATTTACTCACAAACCTCGCTAGCAGTGGACTGGACCCCTGGTCATTATGAGTTCCCTTATCTAGGGACCACTATTTTTAATGCCCCTCCAGATTTTCTTCAGCGTGCAATAGTCATTCACGGAGAAAAGTTGTGACAATGTATTCAATGTAAAAATTTGAAAGATGAGATTTTCAGTCAGTACTCCTTGTGACCTGAATTTATAAATGTAATGGA

Fln Alignment:

Contig10056___LILCLQVGEAEHVFEPRTIQRMELLLLSALKWRMKAVTPLSYLQYGGHILGLEKQFHGEFIMRSSELAFCTINETRLLKFMPSVIAAAIMLWVAREMEVINLNECEDRLLSRLKVAKGPLQCCYQLL----QVSFGQAHVRKRKVCSSLS--KPDSPHRVLDAAFSFST
B8LR95________________LLLDFQVEEAKYLFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGFLPSVVAAAIMLHVIKEIELVNPYQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSSVNIPIPGSPDGVLDATFSCSS

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
261	80	20			0.999996
262	80		20		0.999996
266	77			22	0.999999
272	77			22	0.999999
279		22		77	0.999999
280	22			77	0.999999
281		22	77		0.999999
282	77			22	0.999999
283	77	22			0.999999
284	22		77		0.999999
355	88		11		0.923564
359	88	11			0.923564
361			88	11	0.923564
362		88	11		0.923564
364	88	11			0.923564
365			88	11	0.923564
370	11		88		0.923564
376	11			88	0.923564
557	80			20	0.995493
742		50		50	1.0
744		60		40	1.0
745		40		60	1.0
753	60	40			1.0
754			60	40	1.0
757	60		40		1.0
759	60			40	1.0
760	60		40		1.0
762		40	60		1.0
766			60	40	1.0
768	40	60			1.0
792		16	83		0.994512
793	83		16		0.994512
794	83			16	0.994512
795	83	16			0.994512
797			83	16	0.994512
802		16	83		0.994512
805	83			16	0.994512
807			16	83	0.994512
808	83	16			0.994512
809	83			16	0.994512
810	83		16		0.994512
815	83	16			0.994512
821		10		90	0.90298
823	90			10	0.90298
824		10		90	0.90298
831	90	10			0.90298
836	90	10			0.90298
837	90			10	0.90298
840		10		90	0.90298
841			90	10	0.90298
843	10			90	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain