SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9865

Length: 1434 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9865

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18838	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	polyA specific ribonuclease [Arabidopsis thaliana]	-	-	36%
FL-Next	Isoform 3 of Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN	-	-	36%
Blast2go	poly -specific ribonuclease parn-like	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	59%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	59%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease CAF1	IPR006941	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LG26-3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 392 - 505

Fln protein: S*PWLSLNIHSKFITPLPETVVEFAASLHKQFPYIIDTKYLLKSAPTLQYLMKNKSTSLSLAFTHMCGGIACTSETLNVITNSSVKVVVPTELQRYTDGDSCAKHEAGYDAFMTGCIFAQACNHLDIDFTKIHSPTDLAMAVQLQKYVNLLYLGWINCVVLDLTTGGDVTESRPMVRGRNRPKLVSNNLVLVWGFQTGYNCSDMRGLVSGVLGTTSSITGIFFLDESSAVIHFRNEQVAAEFIHKMEKTMSVSSDCLSSQNPLTTLLYAGGTIAAASYDIYEQICKSSLSKLLFAEQAEALGIRWKIKSRLAAIKRNIEDAKFGTKSFQSNHQSGPIQEETLQDPILADENGKLENQGRHQRFLPYLTEDKFLDGVSTHNCAFAKKARTES*

Protein Length: 393

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCCATAGCAAATTTATTACTCCCTTGCCAGAAACTGTGGTTGAATTTGCTGCTTCTCTCCACAAACAGTTTCCGTACATTATTGATACAAAGTACCTTCTTAAGTCAGCACCGACCTTACAATATTTGATGAAAAACAAGAGCACAAGTCTGTCACTTGCTTTCACCCATATGTGTGGAGGCATTGCTTGTACTTCGGAAACTCTCAATGTGATCACAAATTCTAGTGTGAAGGTTGTTGTTCCGACTGAATTACAAAGGTACACAGATGGGGATTCTTGTGCAAAGCATGAAGCAGGATATGATGCTTTCATGACCGGATGCATATTTGCACAGGCTTGTAATCATTTGGACATTGATTTTACCAAAATTCATTCACCAACTGATCTAGCTATGGCTGTTCAACTTCAGAAATATGTGAATCTACTTTATCTTGGCTGGATCAATTGTGTCGTTCTTGACTTAACCACAGGAGGGGATGTAACAGAGTCTAGACCTATGGTTCGAGGTCGTAACCGTCCAAAGCTTGTATCCAATAACCTAGTGCTTGTTTGGGGCTTTCAAACTGGGTACAATTGCAGTGATATGAGAGGCTTGGTGTCTGGTGTCCTGGGAACAACATCCTCCATCACTGGAATTTTCTTCTTGGATGAGAGCTCTGCAGTCATTCATTTTCGTAATGAGCAAGTTGCAGCTGAATTTATTCATAAAATGGAAAAGACAATGTCAGTGAGCAGTGATTGTTTATCATCTCAGAACCCCTTAACCACACTATTATATGCAGGAGGCACAATTGCAGCAGCAAGCTATGATATATATGAACAGATATGCAAGTCTTCTCTATCCAAATTGCTCTTTGCAGAGCAAGCTGAAGCATTAGGAATAAGATGGAAAATTAAATCTCGTCTGGCAGCAATTAAAAGAAATATTGAAGATGCTAAATTTGGAACCAAAAGCTTTCAATCAAATCATCAAAGTGGTCCTATTCAGGAGGAAACTCTTCAAGATCCTATCTTAGCAGATGAAAATGGAAAACTGGAAAATCAAGGAAGACATCAACGTTTTTTGCCATATTTAACAGAAGACAAATTCTTGGATGGTGTATCTACTCATAATTGTGCTTTTGCAAAGAAGGCGAGAACAGAGAGTTAA___AATGCTTTTTCAGAAATCATATTTATTATTTTATGCTCTGAAATTTTGTTAGTATTTGGAATTTCACCTTTATCTAGTCTCTGGTAGCATGCATCAGATGTTGTTCCTTTCCATGTCATGTTTGTCTAATTTTGATTGTAGCTTATTGTGCAATGCGTGAGTAACTAATCAAAACTTTTGATATCATGTCTTTGATTCTACACAAAAAGATATGCATATTACCTGATGAAATAGGAGAGGAACTCTATATTTCGAT

Fln Alignment:

Contig9865___NIHSKFITPLPETVVEFAASLHKQFPYIIDTKYLLKSAPTLQYLMKNKSTSLSLAFTHMCGGIACTSETLNVITNSSVKVVVPTELQRYTDGDSCAKHEAGYDAFMTGCIFAQACNHLDIDFTKIHSPTDLAMAVQLQKYVNLLYLGWINCVVLDLTTGGDVTESRPMVRGRNRPKLVSNNLVLVWGFQTGYNCSDMRGLVSGVLGTTSSITGIFFLDESSAVIHFRNEQVAAEFIHKMEKTMSVSSDCLSSQNPLTTLLYAGGTIAAASYDIYEQICKSSLSKLLFAEQAEALGIR
Q9LG26-3_____________HVYSKFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGHSNADNWRV------SKFKYENIVLIWNFPRKLKARGIKECICKAFG-SASVTSVYHVDDSAVFVLFKNSELVWDFL-ALKRQLESSDGPVSVLHPLSKIL-EGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
353	60			40	1.0
354	40			60	1.0
414		16	83		0.994512
415	83		16		0.994512
420		16	83		0.994512
434	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain