SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9850

Length: 550 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene9850
CGTCGTGACCTTGGCTGTCACTCATTTCTGGTCATTTGCGCGACGGATCTCTGTTACGTTGTCCATGATTCATTGAGAGAGTTTGATTTGTGTTCTTCTAAGAAGCGAACTGTATGGACATGGAGGAGATATGTCAAGTATTCTTCATAATGGATTACATTTGGGATTGCACATCATTCTGAGGGTCCACAATTTGGTAATGAAGCCACGAATGGAAGAAGTGCGTGCTGGTGTCTTTTCTTTTTGCGCTTTTGTTTGCACTATTCCACTCCTATTCCCTGATGGTTAATCTTCCTCACCCCTCTCTTGCGTTTGTTTAATTCTTGCTTTTCCTTCATATGTAAAGCTGTAAGGAGAAGTTCTGGAGACTAAGAGGAGTGTGTGCTGATGTTACAGATAGTACACCTTCAAAGGAACCGATCTTCTTGCAAATAATGGTGACTATGAAAGCCATGCCTTTGTATTGTGCTCTTCCTACGCTTTCAGAATATATGATTGAGAAATGGTTGGACAAAGTGTTATGCCGCTATAAATGAAGTTGGGTGGCCTT

Ace file of the UniGene uagpf_v2_unigene9850 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20085	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sterol-C5(6)-desaturase homolog [Nicotiana tabacum]	-	-	7.0e-09	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	2.14138e-16	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid hydroxylase	IPR006694	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRI4

Fln msg: Overlapping hits, possible frame ERROR between 500 and 496, Distance to subject end: 150 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 69 - 315

Fln protein: SCKEKFWRLRGVCADVTDSTPSKEPIFLQIMVTMKAMPLYCALPTLSEYMxxxNGWTKCYAAINEVGWP

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTGGTCATTTGCGCGACGGATCTCTGTTACGTTGTCCATGATTCATTGAGAGAGTTTGATTTGTGTTCTTCTAAGAAGCGAACTGTATGGACATGGAGGAGATATGTCAAGTATTCTTCATAATGGATTACATTTGGGATTGCACATCATTCTGAGGGTCCACAATTTGGTAATGAAGCCACGAATGGAAGAAGTGCGTGCTGGTGTCTTTTCTTTTTGCGCTTTTGTTTGCACTATTCCACTCCTATTCCCTGATGGTTAATCTTCCTCACCCCTCTCTTGCGTTTGTTTAATTCTTGCTTTTCCTTCATATGTAAAGCTGTAAGGAGAAGTTCTGGAGACTAAGAGGAGTGTGTGCTGATGTTACAGATAGTACACCTTCAAAGGAACCGATCTTCTTGCAAATAATGGTGACTATGAAAGCCATGCCTTTGTATTGTGCTCTTCCTACGCTTTCAGAATATATGxxxxxxxxxAATGGTTGGACAAAGTGTTATGCCGCTATAAATGAAGTTGGGTGGCCTT

Fln Alignment:

Contig9850___DSTPSKEPIFLQIMVTMKAMPLYCALPTLSEYMxxNGWTKCYAAINEVGWP
B8LRI4_______________DSTPSKEPIFLQIMVTMKAMPLYSALPTLSEYMxxNGWTKCFANINEVGWP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain