SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9844

Length: 1176 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9844

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18829	3/18
SustainPine v2.0	sp_v2.0_unigene21084	1/18
SustainPine v2.0	sp_v2.0_unigene28467	12/18

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	chaperone protein chloroplastic-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	89%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	89%
Blast2go	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	89%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
26	66			33	0.997452
27	66		33		0.997452
29		33	66		0.997452
30		33		66	0.997452
33		66	33		0.997452
34	66		33		0.997452
35		33	66		0.997452
39		33	66		0.997452
40	33			66	0.997452
41		33		66	0.997452
235			16	83	0.994512
346	75	25			0.996473
347			25	75	0.996473
350			25	75	0.996473
352			33	66	0.997452
353	33	66			0.997452
356		66		33	0.997452
358	66			33	0.997452
359			33	66	0.997452
362	66			33	0.997452
364	66			33	0.997452
477		33		66	0.997452
481	66		33		0.997452
482	66			33	0.997452
487			66	33	0.997452
488	66			33	0.997452
492			66	33	0.997452
497		33	66		0.997452
499		33		66	0.997452
500	33		66		0.997452
518		25		75	0.996473
519			25	75	0.996473
521	75	25			0.996473
522		75	25		0.996473
526	75	25			0.996473
527	75	25			0.996473
528	75			25	0.996473
529	75			25	0.996473
531		75	25		0.996473
533	75			25	0.996473
534			25	75	0.996473
536	75	25			0.996473
538	75	25			0.996473
539			75	25	0.996473
540		25		75	0.996473
559	25		75		0.996473
571		80		20	0.995493
573			20	80	0.995493
576	20		80		0.995493
577	80	20			0.995493
579	80			20	0.995493
580		80		20	0.995493
581	80		20		0.995493
582	80		20		0.995493
585			20	80	0.995493
587		20	80		0.995493
588	20			80	0.995493
589	80	20			0.995493
590			80	20	0.995493
591		20	80		0.995493
592	20			80	0.995493
646	80	20			0.995493
649	80	20			0.995493
650			20	80	0.995493
655	80	20			0.995493
656			80	20	0.995493
658		80	20		0.995493
659			20	80	0.995493
660	80	20			0.995493
663			85	14	0.993533
664		14	85		0.993533
665	14		85		0.993533
666	85	14			0.993533
668	14			85	0.993533
759	87			12	0.992554
760	87	12			0.992554
888		25		75	0.996473
893		25	75		0.996473
895	66			33	0.997452
896			66	33	0.997452
897	66		33		0.997452
898	66		33		0.997452
900		66		33	0.997452
905		33	66		0.997452
907	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain