SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9816

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene9816
ATGATATCATCCTTCTGGTTATATATGTAGATGATATCATTGTCACAAGTAGTGAAGAAAAGACTATAGGATAGATAAAAAAATATATAAGAAAATATTTTGACATAACTGATCTAGGCCTCCTTCACTAATATTTAGGTGTAGAAGTCTGACAAACAGGTAGCAGCATCTTCATATCACAATCAAAATATGCCAGAGGTTTGTTGGATAGATTCAGAATGACAGATTGCAAAATCTCATCTACACTTATGGAGAAAGGATTGAAACTTTCAACACAGACGGACTCTAAGGAAGTTAATGAGTCCATATGCATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene9816 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19706	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE	-	-	2.0e-11	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	copia-type polyprotein	-	-	1.56673e-14	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 111 - 363

Fln protein: DIILLVIYVDDIIVTSSEEKTIG*IKKYIRKYFDITDLGLLH*YLGVEV*QTGSSIFISQSKYARGLLDRFRMTDCKISSTLMEKGLKLSTQTDSKEVNESICMSDSQGHD

Protein Length: 112

Fln nts: ATGATATCATCCTTCTGGTTATATATGTAGATGATATCATTGTCACAAGTAGTGAAGAAAAGACTATAGGATAGATAAAAAAATATATAAGAAAATATTTTGACATAACTGATCTAGGCCTCCTTCACTAATATTTAGGTGTAGAAGTCTGACAAACAGGTAGCAGCATCTTCATATCACAATCAAAATATGCCAGAGGTTTGTTGGATAGATTCAGAATGACAGATTGCAAAATCTCATCTACACTTATGGAGAAAGGATTGAAACTTTCAACACAGACGGACTCTAAGGAAGTTAATGAGTCCATATGCATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig9816___TIG*IKKYIRKYFDITDLGLLH*YLGVEV*QTGSSIFISQSKYARGLLDRFRMTDCKISSTLMEKGLKLSTQTDSKEVNESI
B8LKV8_______________TIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain