SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9700

Length: 1148 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9700

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3452	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=DEAD-box ATP-dependent RNA helicase 8 dbj\|BAD25226.1\| putative RNA helicase [Oryza sativa Japonica Group] dbj\|BAG92832.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE57460.1\| hypothetical protein OsJ_07688 [Oryza sativa Japon	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	dead-box atp-dependent rna helicase 8-like	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	93%
Blast2go	ATP binding	GO:0005524	Molecular Function	93%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	93%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 169 - 477

Fln protein: S*PWLSLKFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIKPIPPQIDQAIYCR*

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTATGCATTTGTGGAGGAGAGGCAAAAGGTTCATTGTCTGAACACACTTTTTTCCAAGCTCCAAATCAACCAATCAATAATTTTCTGCAATTCTGTTAATCGAGTAGAACTCTTGGCCAAAAAAATTACGGAGCTTGGATATTCATGCTTTTACATCCATGCGAAGATGTTACAATCTCACCGGAACAGAGTATTCCATGACTTCCGTAATGGTGCCTGTAGAAATCTGGTGTCTTCAGATCTGTTTACGAGAGGAATAGATATTCAAGCGGTTAATGTTGTTATCAATTTTGACTTTCCTAAGAATTCAGAAACTTATTTGCATAGAGTAGGGCGATCTGGAAGGTTTGGTCATCTAGGACTCGCTGTAAATTTGATTACATATGAGGATCGGTTTAATTTGTACAAGATTGAGCAGGAACTTGGCACTGAAATAAAGCCAATCCCACCTCAAATAGATCAAGCCATTTACTGCAGATAG___AGGGATGAGGGCATATGAGTATTTGGCATTGTGTTATATAGTTGCAAATTAATGAGGGTTCGGCTGGCATTACATTTCTTTGAAATTTCAACTTAGAAGGGGCACAGACAAATTCCGAAACATGCAACATATATTTCCCTATGCCGATGCATGGGAGGACCATTCAGTGCTGTAGATGGGCAGCATTTATTTACAGCCATGGATCATGTATGCACTCTTGCAAGACGCCTCACATGCAATCACTTTTATGTACAGAATGCTGTTGAGGTCTGGATATTTGGAAAATTGTGTATTGCAAGTCAATGTGCTGTGAAATAAGCGCACATTCGGGATTAATCCAGAATGTAGGATGCTTTGATGTATAATTTGATTCCATATGAACAATGGACTTATGTGCTAGGGCATTTGGACTGAGAATATTCTGCTTCTGTTTTAAGTTGCCAAGGTAGACTCAAATTATCCCCAGTGACAGTTTTTGTTTAGAAGATATTTTATTATTATTATGTTTAGTGACTCAAATTGCTAATTTCTGATGCTTATCAAATTATTGTCGAGCTAAGAAACGTTTGAGTTTGGATATTTTGCGTATATGTAATAATATAGTTATTGACGAATAAGAATATTTTCGGTTGGACTTTG

Fln Alignment:

Contig9700___KFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIKPIPPQIDQAIYCR
B8LKI3_______________QFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIQQIPPQIDQTVYCR

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
298	83	16			0.994512
300		83		16	0.994512
301		16	83		0.994512
304			16	83	0.994512
306	83	16			0.994512
307		16		83	0.994512
308			83	16	0.994512
310			20	80	0.995493
312		20		80	0.995493
314	80		20		0.995493
318	80	20			0.995493
546		25		75	0.996473
549		25		75	0.996473
550	75		25		0.996473
552	75		25		0.996473
553	25			75	0.996473
554	75	25			0.996473
555		25	75		0.996473
559		75	25		0.996473
560	75	25			0.996473
561	75			25	0.996473
562	75		25		0.996473
564		25		75	0.996473
566	75	25			0.996473
568		25	75		0.996473
572			75	25	0.996473
663			80	20	0.995493
732			30	70	1.0
736	70		30		1.0
737	70			30	1.0
743		70		30	1.0
745		70	30		1.0
746	70		30		1.0
754	63	27	9		1.0
772	90	10			0.90298
774		10	90		0.90298
775	10	90			0.90298
865	66	33			1.0
926		62		37	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1001	1013	TTA TTA TTA TTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain