SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9643

Length: 511 nt

UniGene Fasta

>uagpf_v2_unigene9643
CGTCGTGACCTTGGCTGTCACTCACATGTGCCAACCTAGCAGCTCTGGAACAGGGCAAGCAGCTGCAGGGATATAGCATAAAAGTGGGATTACAGTTCGATATTTTTGTGGGAAGTGCTCTTATTAGCATGTATGCAAAATGTGGGTGTATAGACAGTGCACGCCAGATGTTTGATGAAACCCCTGGAAGGGATGTGGTTTCTTGGAATGCAATGATTGCAGGATATGCGCAGCATGGTTTTGGTAATGATGCACTTAAGATTTTTGATGATATGCAAAGGACTGGTATGAAGCCTAATGATGTGACTTTCATTGGTGTCCTCTGCGCATGCAGCCATGCTGGTCTTGTAGACAAAGGTTTATATTACTTTGATTCCATAGAACAAGTTCATTGCATCACACCCAGAGCAGACCATTATGCTTGCATTATTGATCTCCTTGGTCGTGCTGGACGCGTGGAAGAGGCTAAGAATATTGCTAACAATGCAAAATGTGAACCGAATCCTAGTAT

Ace file of the UniGene uagpf_v2_unigene9643

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene65047	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	pentatricopeptide repeat-containing protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein of unknown function DUF1635	IPR012862	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 201 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 167 - 370

Fln protein: PWLSLTCANLAALEQGKQLQGYSIKVGLQFDIFVGSALISMYAKCGCIDSARQMFDETPGRDVVSWNAMIAGYAQHGFGNDALKIFDDMQRTGMKPNDVTFIGVLCACSHAGLVDKGLYYFDSIEQVHCITPRADHYACIIDLLGRAGRVEEAKNIANNAKCEPNPS

Protein Length: 168

Fln nts: CGTCGTGACCTTGGCTGTCACTCACATGTGCCAACCTAGCAGCTCTGGAACAGGGCAAGCAGCTGCAGGGATATAGCATAAAAGTGGGATTACAGTTCGATATTTTTGTGGGAAGTGCTCTTATTAGCATGTATGCAAAATGTGGGTGTATAGACAGTGCACGCCAGATGTTTGATGAAACCCCTGGAAGGGATGTGGTTTCTTGGAATGCAATGATTGCAGGATATGCGCAGCATGGTTTTGGTAATGATGCACTTAAGATTTTTGATGATATGCAAAGGACTGGTATGAAGCCTAATGATGTGACTTTCATTGGTGTCCTCTGCGCATGCAGCCATGCTGGTCTTGTAGACAAAGGTTTATATTACTTTGATTCCATAGAACAAGTTCATTGCATCACACCCAGAGCAGACCATTATGCTTGCATTATTGATCTCCTTGGTCGTGCTGGACGCGTGGAAGAGGCTAAGAATATTGCTAACAATGCAAAATGTGAACCGAATCCTAGTAT

Fln Alignment:

Contig9643___CANLAALEQGKQLQGYSIKVGLQFDIFVGSALISMYAKCGCIDSARQMFDETPGRDVVSWNAMIAGYAQHGFGNDALKIFDDMQRTGMKPNDVTFIGVLCACSHAGLVDKGLYYFDSIEQVHCITPRADHYACIIDLLGRAGRVEEAKNIANNAKCEPNPS
A9P0W0_______________CASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNAS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
75	66	33			0.997452
79	66		33		0.997452
81	66		33		0.997452
83	66	33			0.997452
84	66	33			0.997452
85			66	33	0.997452
90			66	33	0.997452
91	66		33		0.997452
93		33		66	0.997452
97	66	33			0.997452
98	33		66		0.997452
141	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain