SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9587

Length: 595 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9587

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11374	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=1 Tax=Ricinus communis RepID=B9SC90_RICCO	-	-	65%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	dna polymerase alpha catalytic	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Pyrimidine metabolism	00240	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	75%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	75%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	75%
Blast2go	lagging strand elongation	GO:0006273	Biological Process	75%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	75%
Blast2go	nucleoside binding	GO:0001882	Molecular Function	75%
Blast2go	DNA primase activity	GO:0003896	Molecular Function	75%
Blast2go	DNA binding	GO:0003677	Molecular Function	75%
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	Zinc finger, DNA-directed DNA polymerase, family B, alpha	IPR015088	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
25	33			66	0.997452
26		66	33		0.997452
35			33	66	0.997452
36			66	33	0.997452
37	33		66		0.997452
39	33			66	0.997452
40	33		66		0.997452
41			33	66	0.997452
47		66		33	0.997452
239	75	25			0.996473
245			25	75	0.996473
249	60	40			1.0
250	60		20		0.99255
253	20	60			0.99255
254	80		20		0.995493
256			20	80	0.995493
257	20			80	0.995493
258	80	20			0.995493
260	80			20	0.995493
264	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain