SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9559

Length: 470 nt

UniGene Fasta

>uagpf_v2_unigene9559
CGTCGTGACCTTGGCTGTCACTCATCTGTTTGGAGATTTCTGGGAGCGTTTTATTGATTCACTGAAGGCTCTTCGTGACAAACAACAGCGAACTGTTTATCGCTTGACATTGGTCAAAGGTTGGAATGTAGAAGAATTAGATGCGTATACAGAGCTGATTAAACTTGGAAAACCAGACTTCGTCGAGATCAAAGGGGTTACTTATTGTGGCTCGTCCAAAACTTCTACCTTAACTATGGAAAATGTTCCATGGCATCATGATGTTAAAGCTTTTGCAGAGGCTTTAGTGGCAAGGACTAAAGGGGAATACGAGCTTTCTTGTGAGCATGAACATTCCTGCTGTGTACTCTTGGCCAATGCAGATAAATTTAAGGTGCAGGGACAGTGGCTTACTTGGATTGACTATGAAAGGTTCCATGACTTGGTTGCATCTGGAGAAGCTGTTAACAGCAAAGACTACACAGCTCCCA

Ace file of the UniGene uagpf_v2_unigene9559

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9122	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=tRNA wybutosine-synthesizing protein 1 homolog gb\|AAN65027.1\| putative oxidoreductase [Oryza sativa Japonica Group] gb\|ABF99122.1\| radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed [Oryza sativa Japonica	-	-	74%
FL-Next	sp=tRNA wybutosine-synthesizing protein 1 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	trna wybutosine-synthesizing protein 1 homolog	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH--hemoprotein reductase.	EC:1.6.2.4	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	iron ion binding	GO:0005506	Molecular Function	85%
Blast2go	NADPH-hemoprotein reductase activity	GO:0003958	Molecular Function	85%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	85%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	85%
Blast2go	FMN binding	GO:0010181	Molecular Function	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RXN5

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 156 - 647

Fln protein: VVTLAVTHLFGDFWERFIDSLKALRDKQQRTVYRLTLVKGWNVEELDAYTELIKLGKPDFVEIKGVTYCGSSKTSTLTMENVPWHHDVKAFAEALVARTKGEYELSCEHEHSCCVLLANADKFKVQGQWLTWIDYERFHDLVASGEAVNSKDYTAP

Protein Length: 157

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGTTTGGAGATTTCTGGGAGCGTTTTATTGATTCACTGAAGGCTCTTCGTGACAAACAACAGCGAACTGTTTATCGCTTGACATTGGTCAAAGGTTGGAATGTAGAAGAATTAGATGCGTATACAGAGCTGATTAAACTTGGAAAACCAGACTTCGTCGAGATCAAAGGGGTTACTTATTGTGGCTCGTCCAAAACTTCTACCTTAACTATGGAAAATGTTCCATGGCATCATGATGTTAAAGCTTTTGCAGAGGCTTTAGTGGCAAGGACTAAAGGGGAATACGAGCTTTCTTGTGAGCATGAACATTCCTGCTGTGTACTCTTGGCCAATGCAGATAAATTTAAGGTGCAGGGACAGTGGCTTACTTGGATTGACTATGAAAGGTTCCATGACTTGGTTGCATCTGGAGAAGCTGTTAACAGCAAAGACTACACAGCTCCCA

Fln Alignment:

Contig9559___LFGDFWERFIDSLKALRDKQQRTVYRLTLVKGWNVEELDAYTELIKLGKPDFVEIKGVTYCGSSKTSTLTMENVPWHHDVKAFAEALVARTKGEYELSCEHEHSCCVLLANADKFKVQGQWLTWIDYERFHDLVASGEAVNSKDYTA
Q8RXN5_______________LFADFWERFIDSLKALQEKQQRTVYRLTLVKGWNTEELDAYFNLFSIGKPDFIEIKGVTYCGSSATSKLTMENVPWHTDVKAFSEALSLKSNGEYEVACEHAHSCCVLLGRTEKFKVDGKWFTWIDYEKFHDLVASGEPFTSTDYMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain