SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9503

Length: 243 nt

UniGene Fasta

>uagpf_v2_unigene9503
CGTCGTGACCTTGGCTGTCACTCATGATTACCTTGGGGAGTATACTGGTGAGTTGATTTCACATCGAGAAGCTGATAAACGAGGAAAGATTTATGATCGAGAAGACTCCTCCTTCCTTTTCAACTTGAACGATCAGTACGTTCTTGATGCATACCGGAAGGGGGATAAGTTGAAATTTGCAAATCATTCACCAACTCCAAATTGTTATGCAAAGGTGATTATGGTTGCTGGTGATCATAGAGT

Ace file of the UniGene uagpf_v2_unigene9503

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3877	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] sp\|P93831.2\|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN	-	-	64%
FL-Next	sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress).	-	-	91%
Blast2go	polycomb protein ez1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	histone lysine methylation	GO:0034968	Biological Process	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93831

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 80 - 902

Fln protein: VVTLAVTHDYLGEYTGELISHREADKRGKIYDREDSSFLFNLNDQYVLDAYRKGDKLKFANHSPTPNCYAKVIMVAGDHR

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATTACCTTGGGGAGTATACTGGTGAGTTGATTTCACATCGAGAAGCTGATAAACGAGGAAAGATTTATGATCGAGAAGACTCCTCCTTCCTTTTCAACTTGAACGATCAGTACGTTCTTGATGCATACCGGAAGGGGGATAAGTTGAAATTTGCAAATCATTCACCAACTCCAAATTGTTATGCAAAGGTGATTATGGTTGCTGGTGATCATAGAGT

Fln Alignment:

Contig9503___HDYLGEYTGELISHREADKRGKIYDREDSSFLFNLNDQYVLDAYRKGDKLKFANHSPTPNCYAKVIMVAGDHR
P93831_______________HEYLGEYTGELISHKEADKRGKIYDRENCSFLFNLNDQFVLDAYRKGDKLKFANHSPEPNCYAKVIMVAGDHR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain