SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9473

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene9473
CGTCGTGACCTTGGCTGTCACTCAGTTCTTCTTCTCCTAGGCCTGTTAAGAATCCTGCCACTAATGACTCGAGGCTTCAGACTTCATGGGGACAATTGTCAATTTTAGATAGTATCTTGCGAGGAGAGCTTCCTTGTGACCTTGAAAAATCAAACTGTACATATGATATTTTGTTGTTACTTAGAGTTTTGGAAGGTCTTAATCAATTATCTCCTCGTCTTAGGGCTCTAGAAGCATCAGATGCATTTGCAGAAGGGAAAGTAATTAACTTTCAAGAATTG

Ace file of the UniGene uagpf_v2_unigene9473 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1450	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative HECT ubiquitin-protein ligase 3 [Oryza sativa Japonica Group] dbj\|BAD08189.1\| putative HECT ubiquitin-protein ligase 3 [Oryza sativa Japonica Group]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	e3 ubiquitin-protein ligase upl3-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tryptophan metabolism	00380		0.0	72%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	72%
Blast2go	acid-amino acid ligase activity	GO:0016881	Molecular Function	72%
Blast2go	intracellular	GO:0005622	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	HECT	IPR000569	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKY6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 530 aas, your sequence is shorter than subject: 93 - 656

Fln protein: S*PWLSLSSSSPRPVKNPATNDSRLQTSWGQLSILDSILRGELPCDLEKSNCTYDILLLLRVLEGLNQLSPRLRALEASDAFAEGKVINFQEL

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCTTCTTCTCCTAGGCCTGTTAAGAATCCTGCCACTAATGACTCGAGGCTTCAGACTTCATGGGGACAATTGTCAATTTTAGATAGTATCTTGCGAGGAGAGCTTCCTTGTGACCTTGAAAAATCAAACTGTACATATGATATTTTGTTGTTACTTAGAGTTTTGGAAGGTCTTAATCAATTATCTCCTCGTCTTAGGGCTCTAGAAGCATCAGATGCATTTGCAGAAGGGAAAGTAATTAACTTTCAAGAATTG

Fln Alignment:

Contig9473___RPVKNPATNDSRLQTSWGQLSILDSILRGELPCDLEKSNCTYDILLLLRVLEGLNQLSPRLRALEASDAFAEGKVINFQEL
B8LKY6_______________RPLKNSTTSSSRLQTSWERLSFLDSILQGELPCDLEKSNCTYDILLLLRVLECLNQLSPRLRALEASDAFAEGKIINFQEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain