SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9467

Length: 394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene9467
AAGACATGCTTAAAGATATGCAATGGAAGAATGTATGTTATGAGTATACTGATGACTACAGATTGCAAATTAAGCAAAGATGATGAATCCCTTCGATAGATGCAACTCTTTACAGATCAATAATTGGAGCTCTTCTATCCTTAACTACTTCATGACCTGATATTATGCAAACAGTAGGAATGGTGGCAAGATTTCAATCAGCTCCTAAGGAATCCCATTTGATGGTTGTTAAAAAAATTCTCAGGTATTTGAAAGGTACTCCTAATTTTGGCTTATGGTATCCCAAAAGCACAACTCTTACTTTGACAGCTTACACTGATGTTGATTGGGCTGGAAGGTTAGATGATCAAAAAAGTATTAGCGAAAATGCTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene9467 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20678	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative copia protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84T44_ORYSJ	-	-	9.0e-23	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	copia-type pol polyprotein	-	-	5.32162e-27	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 125 - 363

Fln protein: DMLKDMQWKNVCYEYTDDYRLQIKQR**IPSIDATLYRSIIGALLSLTTS*PDIMQTVGMVARFQSAPKESHLMVVKKILRYLKGTPNFGLWYPKSTTLTLTAYTDVDWAGRLDDQKSISENAE*

Protein Length: 126

Fln nts: AAGACATGCTTAAAGATATGCAATGGAAGAATGTATGTTATGAGTATACTGATGACTACAGATTGCAAATTAAGCAAAGATGATGAATCCCTTCGATAGATGCAACTCTTTACAGATCAATAATTGGAGCTCTTCTATCCTTAACTACTTCATGACCTGATATTATGCAAACAGTAGGAATGGTGGCAAGATTTCAATCAGCTCCTAAGGAATCCCATTTGATGGTTGTTAAAAAAATTCTCAGGTATTTGAAAGGTACTCCTAATTTTGGCTTATGGTATCCCAAAAGCACAACTCTTACTTTGACAGCTTACACTGATGTTGATTGGGCTGGAAGGTTAGATGATCAAAAAAGTATTAGCGAAAATGCTGAGTGA___CAGCCAAGGTCACGACG

Fln Alignment:

Contig9467___DATLYRSIIGALLSLTTS*PDIMQTVGMVARFQSAPKESHLMVVKKILRYLKGTPNFGLWYPKSTTLTLTAYTDVDWAGRLDDQKSIS
B8LKV8_______________DSTIFRKLVGSLMYLTATRPDIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAGTMNHGILYSTSNNLQLVGYTDSDFAGSIDDRKSTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain