SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9464

Length: 190 nt

UniGene Fasta

>uagpf_v2_unigene9464
CGTCGTGACCTTGGCTGTCACTCAAGAGTTTAGTAATGATCTCAACTGGACTTCTCCATTTACTCGCACACCAGAAGGAAGCCCAAGAAGACGTGATTTAATGCCTGACATTGATAGAATACAAATCAATGTGGGTAGGCTATCACATGAATTTGAAGAGGAACATCGCAGTAGACAGCATGATCTTTCG

Ace file of the UniGene uagpf_v2_unigene9464

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1814	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase [Oryza sativa Japonica Group] gb\|EEE59981.1\| hypothetical protein OsJ_12694 [Oryza sativa Japonica Group]	-	-	8.99998e-41	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	map protein kinase	-	-	0.0	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	64%
Blast2go	ATP binding	GO:0005524	Molecular Function	64%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	HECT	IPR000569	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 63 - 902

Fln protein: VVTLAVTQEFSNDLNWTSPFTRTPEGSPRRRDLMPDIDRIQINVGRLSHEFEEEHRSRQHDLS

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGTTTAGTAATGATCTCAACTGGACTTCTCCATTTACTCGCACACCAGAAGGAAGCCCAAGAAGACGTGATTTAATGCCTGACATTGATAGAATACAAATCAATGTGGGTAGGCTATCACATGAATTTGAAGAGGAACATCGCAGTAGACAGCATGATCTTTCG

Fln Alignment:

Contig9464___VVTLAVTQEFSNDLNWTSPFTRTPEGSPRRRDLMPDIDRIQINVGRLSHEFEEEHRSRQHDLS
B8LR19_______________VLNIASRSEFSSDHNRNSPFTRTPEGSPRRRDLMPDIDRKQTNVGRLSHEFEECH-NRQHDLS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain