SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9449

Length: 813 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene9449 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27731	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	MSCS-like 2 protein [Arabidopsis thaliana] dbj\|BAH20174.1\| AT5G10490 [Arabidopsis thaliana] gb\|AED91552.1\| MSCS-like 2 protein [Arabidopsis thaliana]	-	-	53%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	35%
Blast2go	mscs-like 2 protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	plastid organization	GO:0009657	Biological Process	70%
Blast2go	ion channel activity	GO:0005216	Molecular Function	70%
Blast2go	plastid envelope	GO:0009526	Cellular Component	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Mechanosensitive ion channel MscS	IPR006685	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
548	33	66			0.997452
549			33	66	0.997452
551			33	66	0.997452
552	33			66	0.997452
555	66		33		0.997452
556	66	33			0.997452
560		66	33		0.997452
561			33	66	0.997452
563		33	66		0.997452
564	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain