SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9437

Length: 315 nt

UniGene Fasta

>uagpf_v2_unigene9437
CGTCGTGACCTTGGCTGTCACTCAGAGTTGAGAAAGGTGAAGCAGTTCATATGGCAGGCGGGATAGGCATGATTCTCTGCAATGCACCCGTAAATGCCAACGAGGTCGCTGCAGACTCTCATGTTCTTCCAGCTACACAGTTGAATGCAATTGATGGGGCAGAAGTATTTGACTACATCAATTCTACAGCGTCCCCTGTTGCTTACATTTCTCCGGCAAGAACTGTATTGCATGCAAAGCCAGCTCCAGTGATGACAGCTATTTTCCTCTCAGGGACCGAATAGTCTTACGCCAGACATCCTCAAGCCTGATATT

Ace file of the UniGene uagpf_v2_unigene9437

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29772	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Subtilisin-like serine protease n=1 Tax=Carica papaya RepID=C3VDI0_CARPA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	subtilisin-like protease	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	65%
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 171 aas, your sequence is shorter than subject: 94 - 690

Fln protein: S*PWLSLRVEKGEAVHMAGGIGMILCNAPVNANEVAADSHVLPATQLNAIDGAEVFDYINSTASPVAYISPARTVLHAKPAPVMTAIFLSGTE*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTTGAGAAAGGTGAAGCAGTTCATATGGCAGGCGGGATAGGCATGATTCTCTGCAATGCACCCGTAAATGCCAACGAGGTCGCTGCAGACTCTCATGTTCTTCCAGCTACACAGTTGAATGCAATTGATGGGGCAGAAGTATTTGACTACATCAATTCTACAGCGTCCCCTGTTGCTTACATTTCTCCGGCAAGAACTGTATTGCATGCAAAGCCAGCTCCAGTGATGACAGCTATTTTCCTCTCAGGGACCGAATAGTCTTACGCCAGACATCCTCAAGCCTGATATT

Fln Alignment:

Contig9437___LSLRVEKGEAVHMAGGIGMILCNAPVNANEVAADSHVLPATQLNAIDGAEVFDYINSTASPVAYISPARTVLHAKPAPVMTAIFLSG
C0PPS1_______________ISARVAKGAVVKSAGGVGMILANTDANGEELVADCHLLPASAVGEANGDAIKHYITSTKNPTATIHFGGTVLGVKPSPVVAAFSSRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain