SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9425

Length: 867 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene9425

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2464	13/16

Source	Descriptions	Term	Type	Identity
AutoFact	putative mitotic arrest defective protein 2B [Oryza sativa Japonica Group] gb\|EEE55135.1\| hypothetical protein OsJ_02922 [Oryza sativa Japonica Group]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	mitotic spindle assembly checkpoint protein mad2b	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	73%
Blast2go	mitotic cell cycle spindle assembly checkpoint	GO:0007094	Biological Process	73%
Blast2go	response to DNA damage stimulus	GO:0006974	Biological Process	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	DNA-binding HORMA	IPR003511	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
179	66		33		0.997452
290		16		83	0.994512
291	83		16		0.994512
293		16		83	0.994512
297		16	83		0.994512
298	83	16			0.994512
299			83	16	0.994512
300	83			16	0.994512
302	83		16		0.994512
303		16	83		0.994512
306			83	16	0.994512
309		16	83		0.994512
350		33		66	1.0
401		25		75	0.996473
425		75		25	0.996473
436	87	12			0.992554
439		12		87	0.992554
442		87	12		0.992554
448		87		12	0.992554
449			12	87	0.992554
451	87			12	0.992554
456	87	12			0.992554
458		12	87		0.992554
459	12	87			0.992554
465		87		12	0.992554
708		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain