SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9381

Length: 395 nt

UniGene Fasta

>uagpf_v2_unigene9381
CGTCGTGACCTTGGCTGTCACTCAGGTTTTCTTTGTCCCGTCCATACACCAGATGGAACACCTTGTGGATTGCTACTCCATATGACAGCTCAATGTCGAATCACCTCGGACATTGATTCAGAGGGAAATATTAAACAGCCCTTAAAAATATTGAAAGCAATCACAAATGTCTTGATAGATTTTGGAATGACTCCTGTGTTGCCAAGGTTGGAACATGCTGGCCCACCAGAAGTTTTGAGTGTTCTCTTGGATGGTCGGATAATTGGGTATATTACTTCCTTGAAAATTTCAGAAGCTGTTGAACATCTGCGGAGTTTGAAGCTTGCTAAAGCATCAGGGATTCCAGAGGATCTCGAGGTGGGATATATACCATGCACATTTGCTGGTGCATATCC

Ace file of the UniGene uagpf_v2_unigene9381

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10832	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI	-	-	66%
FL-Next	sp=DNA-directed RNA polymerase; Vitis vinifera (Grape).	-	-	62%
Blast2go	dna-directed rna polymerase i subunit rpa2	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Pyrimidine metabolism	00240	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	75%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	75%
Blast2go	binding	GO:0005488	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	RNA polymerase, beta subunit, conserved site	IPR007121	-	-
Sma3	RNA polymerase Rpb2, domain 7	IPR007641	-	-
Sma3	RNA polymerase Rpb2, domain 2	IPR007642	-	-
Sma3	RNA polymerase, beta subunit, protrusion	IPR007644	-	-
Sma3	RNA polymerase Rpb2, domain 3	IPR007645	-	-
Sma3	RNA polymerase Rpb2, domain 4	IPR007646	-	-
Sma3	RNA polymerase Rpb2, domain 5	IPR007647	-	-
Sma3	RNA polymerase I, Rpa2 specific	IPR009674	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HVC4

Fln msg: Distance to subject end: 559 aas, your sequence is shorter than subject: 131 - 1135

Fln protein: RRDLGCHSGFLCPVHTPDGTPCGLLLHMTAQCRITSDIDSEGNIKQPLKILKAITNVLIDFGMTPVLPRLEHAGPPEVLSVLLDGRIIGYITSLKISEAVEHLRSLKLAKASGIPEDLEVGYIPCTFAGAY

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTCTTTGTCCCGTCCATACACCAGATGGAACACCTTGTGGATTGCTACTCCATATGACAGCTCAATGTCGAATCACCTCGGACATTGATTCAGAGGGAAATATTAAACAGCCCTTAAAAATATTGAAAGCAATCACAAATGTCTTGATAGATTTTGGAATGACTCCTGTGTTGCCAAGGTTGGAACATGCTGGCCCACCAGAAGTTTTGAGTGTTCTCTTGGATGGTCGGATAATTGGGTATATTACTTCCTTGAAAATTTCAGAAGCTGTTGAACATCTGCGGAGTTTGAAGCTTGCTAAAGCATCAGGGATTCCAGAGGATCTCGAGGTGGGATATATACCATGCACATTTGCTGGTGCATATCC

Fln Alignment:

Contig9381___GFLCPVHTPDGTPCGLLLHMTAQCRITSDIDSEGNIKQPLKILKAITNVLIDFGMTPVLPRLEHAGPPEVLSVLLDGRIIGYITSLKISEAVEHLRSLKLAKASGIPEDLEVGYIPCTFAGAY
F6HVC4_______________GFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
120	66		33		1.0
121			66	33	1.0
122	66	33			1.0
124			66	33	1.0
128	60	40			1.0
129	60			40	1.0
131	60		40		1.0
132			40	60	1.0
133		40		60	1.0
134	60			40	1.0
135	60		40		1.0
136	60			40	1.0
140		20	60	20	0.99255
141		80		20	0.995493
142	20	80			0.995493
143	20	60		20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain