SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9056

Length: 370 nt

UniGene Fasta

>uagpf_v2_unigene9056
CGTCGTGACCTTGGCTGTCACTCATTAATTAAGATTGCCCATAAATGTAAGGTACCTGAGCTGGAAAGATTTCCGGTACTCTCGAGGCGTGTGGATGAAGTTGTAGGAAACTTTTTACGTGAAGGCTTGGCTCCAGCAGAGACAATGATTGGGCACCTTATTGAAATGGAGATGGACTACATAAATACTTCACATCCTACATTTATTGGTGGCAGTAAGGCAGTAGAAGTTGCTTTACAACAGCAAAGGTCATCCAAGACATCAGCTCATATGGGTAAATCTAAGGATGATGCTGATTCTGATCGAATCTCAACTTCTGAGAAAGGTCCGAAATCACGAGCTATACTTGCAAGGTCCAGTGCATCTGGAG

Ace file of the UniGene uagpf_v2_unigene9056

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1737	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	dynamin-related protein 3A [Arabidopsis thaliana] sp\|Q8S944.2\|DRP3A_ARATH RecName: Full=Dynamin-related protein 3A; AltName: Full=Dynamin-like protein 2; AltName: Full=Dynamin-like protein 2a emb\|CAA20578.1\| Arabidopsis dynamin-like protein ADL2 [Arabidop	-	-	65%
FL-Next	sp=Dynamin-related protein 3A; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	dynamin-related protein 3a-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on NADH or NADPH, With a quinone or similar compound as acceptor.	EC:1.6.5.-	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	83%
Blast2go	GTP binding	GO:0005525	Molecular Function	83%
Blast2go	oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	GO:0016655	Molecular Function	83%
Blast2go	GTPase activity	GO:0003924	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	G-patch domain	IPR000467	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S944

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 123 - 808

Fln protein: RRDLGCHSLIKIAHKCKVPELERFPVLSRRVDEVVGNFLREGLAPAETMIGHLIEMEMDYINTSHPTFIGGSKAVEVALQQQRSSKTSAHMGKSKDDADSDRISTSEKGPKSRAILARSSASG

Protein Length: 124

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAATTAAGATTGCCCATAAATGTAAGGTACCTGAGCTGGAAAGATTTCCGGTACTCTCGAGGCGTGTGGATGAAGTTGTAGGAAACTTTTTACGTGAAGGCTTGGCTCCAGCAGAGACAATGATTGGGCACCTTATTGAAATGGAGATGGACTACATAAATACTTCACATCCTACATTTATTGGTGGCAGTAAGGCAGTAGAAGTTGCTTTACAACAGCAAAGGTCATCCAAGACATCAGCTCATATGGGTAAATCTAAGGATGATGCTGATTCTGATCGAATCTCAACTTCTGAGAAAGGTCCGAAATCACGAGCTATACTTGCAAGGTCCAGTGCATCTGGAG

Fln Alignment:

Contig9056___LIKIAHKCKVPELERFPVLSRRVDEVVGNFLREGLAPAETMIGHLIEMEMDYINTSHPTFIGGSKAVEVALQQQRSSKTSAHMGKSKDDADSDRISTSEKGPKSRAILARSS
Q8S944_______________LIKISHRCMMNELQRFPVLRKRMDEVIGDFLREGLEPSEAMIGDIIDMEMDYINTSHPNFIGGTKAVEAAMHQVKSSRIPHPVARPKDTVEPDRTSSSTSQVKSRSFLGRQA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
86	80			20	0.995493
88	20		80		0.995493
90		20	80		0.995493
96	80	20			0.995493
99	80			20	0.995493
100	80	20			0.995493
101	20		80		0.995493
102		20		80	0.995493
105		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain