SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9037

Length: 659 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene9037 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23696	9/17
SustainPine v2.0	sp_v2.0_unigene23811	6/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: copia protein-like n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE983F	-	-	4.0e-09	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	retrotransposon unclassified	-	-	9.97192e-14	49%

Full-Lengther Next Prediction

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
32		33		66	0.997452
60	33			66	0.997452
69	33		66		0.997452
72			33	66	0.997452
91	33	66			1.0
93	33		66		0.997452
108	33		66		1.0
117		60		40	1.0
118		80	20		0.995493
122	20	80			0.995493
124	80	20			0.995493
125	80			20	0.995493
127		80	20		0.995493
129		60		40	1.0
132		80		20	0.995493
151	40		60		1.0
167	40			60	1.0
174		80		20	0.995493
188		80		20	0.995493
208		40		60	1.0
211		80		20	0.995493
215	40			60	1.0
219	20		80		0.995493
260	16		83		0.994512
262		83		16	0.994512
267		83		16	0.994512
269	16		83		0.994512
272	16	83			0.994512
274		83	16		0.994512
280	77		22		0.999999
281			11	88	0.923564
283	22		77		0.999999
284		22	77		0.999999
285	22	77			0.999999
286	77			22	0.999999
288			22	77	0.999999
289			88	11	0.923564
293	22			77	0.999999
294		22		77	0.999999
297	25	62		12	1.0
327		18		81	0.999994
342	10		90		0.90298
343		90		10	0.90298
344		90		10	0.90298
355	77		22		0.999999
362			12	87	0.992554
364		75		25	1.0
365		12		87	0.992554
367	25			75	1.0
370	87		12		0.992554
373	12	87			0.992554
374			12	87	0.992554
378		87		12	0.992554
379		87	12		0.992554
384		12	87		0.992554
391	87		12		0.992554
405	12	87			0.992554
408		87		12	0.992554
415		87		12	0.992554
420		75		25	1.0
421	75		25		1.0
433	12		87		0.992554
436	87		12		0.992554
442			87	12	0.992554
444		75	25		1.0
449	12		87		0.992554
451		87	12		0.992554
468	14		71	14	0.984337
477		75		25	0.996473
486		66		33	0.997452
494			33	66	0.997452
496			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain