SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene9013

Length: 444 nt

UniGene Fasta

>uagpf_v2_unigene9013
CGTCGTGACCTTGGCTGTCACTCAAATATCTACCACAAGAAAGTCCTCAATGTCTTCCCATACCCATGGTTAACCTCCACCCTATCCCTCGCTGCTGGTTCAGCCATCATGCTCGCTACCTGGGCAACCAGAGTGGTGGAGGCTCCGGAAACTGATCTCCAGTTCTGGAAGGCTTTGATCCCTGTTGCCATAGCGCACACCATAGGACACGTAGCAGCTACAGTGAGCATGTCAAAGGTTGCTGTTTCCTTCACCCACGTCATCAAGAGCGCAGAACCAGCGTTTAGTATAGTCGTGTCTCGGTGCCTCCTGGGACAACATTTTCCACTGCCCGTCTACCTGTCTCTGTTACCCATCGTAGGGGCTGTGCTCTCGCTGCGGCCACGGAGCTCAATTTCAACCTTGTAGGATTTATGGGTGCCATGATATCCAACCTCGCATTTG

Ace file of the UniGene uagpf_v2_unigene9013

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19749	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Plastid phosphate translocator n=2 Tax=Fabeae RepID=A3RLB0_VICNA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	glucose-6-phosphate phosphate translocator 2	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	gamete generation	GO:0007276	Biological Process	90%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	90%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	90%
Blast2go	phosphoglycerate transport	GO:0015713	Biological Process	90%
Blast2go	glucose-6-phosphate transport	GO:0015760	Biological Process	90%
Blast2go	triose phosphate transmembrane transport	GO:0035436	Biological Process	90%
Blast2go	regulation of photosynthesis	GO:0010109	Biological Process	90%
Blast2go	photosynthetic acclimation	GO:0009643	Biological Process	90%
Blast2go	response to nematode	GO:0009624	Biological Process	90%
Blast2go	phosphoenolpyruvate transport	GO:0015714	Biological Process	90%
Blast2go	phosphoglycerate transmembrane transporter activity	GO:0015120	Molecular Function	90%
Blast2go	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	90%
Blast2go	glucose-6-phosphate transmembrane transporter activity	GO:0015152	Molecular Function	90%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	90%
Blast2go	triose-phosphate transmembrane transporter activity	GO:0071917	Biological Process	90%
Blast2go	response to karrikin	GO:0080167	Biological Process	90%

Source	InterPros	Term	Type	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Tpt phosphate/phosphoenolpyruvate translocator	IPR004696	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQD0

Fln msg: Overlapping hits, possible frame ERROR between 363 and 363, Distance to subject end: 85 aas, your sequence is shorter than subject: 148 - 341

Fln protein: RRDLGCHSNIYHKKVLNVFPYPWLTSTLSLAAGSAIMLATWATRVVEAPETDLQFWKALIPVAIAHTIGHVAATVSMSKVAVSFTHVIKSAEPAFSIVVSRCLLGQHFPLPVYLSLLPIVxxCALAAATELNFNLVGFMGAMISNLAF

Protein Length: 149

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATCTACCACAAGAAAGTCCTCAATGTCTTCCCATACCCATGGTTAACCTCCACCCTATCCCTCGCTGCTGGTTCAGCCATCATGCTCGCTACCTGGGCAACCAGAGTGGTGGAGGCTCCGGAAACTGATCTCCAGTTCTGGAAGGCTTTGATCCCTGTTGCCATAGCGCACACCATAGGACACGTAGCAGCTACAGTGAGCATGTCAAAGGTTGCTGTTTCCTTCACCCACGTCATCAAGAGCGCAGAACCAGCGTTTAGTATAGTCGTGTCTCGGTGCCTCCTGGGACAACATTTTCCACTGCCCGTCTACCTGTCTCTGTTACCCATCGTAxxxxxxTGTGCTCTCGCTGCGGCCACGGAGCTCAATTTCAACCTTGTAGGATTTATGGGTGCCATGATATCCAACCTCGCATTTG

Fln Alignment:

Contig9013___NIYHKKVLNVFPYPWLTSTLSLAAGSAIMLATWATRVVEAPETDLQFWKALIPVAIAHTIGHVAATVSMSKVAVSFTHVIKSAEPAFSIVVSRCLLGQHFPLPVYLSLLPIVGGCALAAATELNFNLVGFMGAMISNLAF
C0PQD0_______________NIYNKKVLNAFPYPWLTSTLSLAVGSLMMWVSWATRLVDAPDTDLEFWKALAPVAVAHTIGHVAATVSMSKVAVSFTHIIKSAEPAFSVLVSRFILGESFPMPVYLSLLPIIGGCALAAATELNFNMTGFMGAMISNLAF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
60	50	50			1.0
143		50	50		1.0
192	50			50	1.0
235	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain