SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8962

Length: 278 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene8962
CCCTTAGATACTTTGTGTACGAGCAAAACTTGTTTTGGAAAGATGCAGGAGGGATGTTGTTAAACTGTCTCATTGAGGAAGAAGCTGAAAAGGTAATTAATGAGTTTCATAAGGGAGATTGTGGAGGCCATCACTATTGGAAAGCTACTGCTAATAAGGTCCTAAGAGCTGGATATTTTTGGCCAAACATGTTCAAAGACATTTATAAAAAGATAGCAGCCTGTCATGAATGTCAAGTATTTGAAGGAAGAAGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene8962 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20516	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR	-	-	5.0e-13	41%
FL-Next	tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	41%
Blast2go	retrotransposon unclassified	-	-	2.33913e-15	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2HW89

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 293 aas, your sequence is shorter than subject: 85 - 981

Fln protein: LRYFVYEQNLFWKDAGGMLLNCLIEEEAEKVINEFHKGDCGGHHYWKATANKVLRAGYFWPNMFKDIYKKIAACHECQVFEGRR*

Protein Length: 86

Fln nts: CCCTTAGATACTTTGTGTACGAGCAAAACTTGTTTTGGAAAGATGCAGGAGGGATGTTGTTAAACTGTCTCATTGAGGAAGAAGCTGAAAAGGTAATTAATGAGTTTCATAAGGGAGATTGTGGAGGCCATCACTATTGGAAAGCTACTGCTAATAAGGTCCTAAGAGCTGGATATTTTTGGCCAAACATGTTCAAAGACATTTATAAAAAGATAGCAGCCTGTCATGAATGTCAAGTATTTGAAGGAAGAAGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig8962___RYFVYEQNLFWKDAGGMLLNCLIEEEAEKVINEFHKGDCGGHHYWKATANKVLRAGYFWPNMFKDIYKKIAACHECQVF
Q2HW89_______________RFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMREIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain