SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8931

Length: 434 nt

UniGene Fasta

>uagpf_v2_unigene8931
CGTCGTGACCTTGGCTGTCACTCATCTGTTCTGAAACCATTTTATCCTGATGGACTGAAAGTACTTTCTCTATTTTCTGGTATTGGTGGTGCAGAGGTTGCTTTGTATCGTATTGGAATAAATTTAAAATGCGTTGTGGCCGTGGAAACATGTCGAAAGAACAGGTTTATTCTTAGGAGTTGGTGGAGGAAAACAGGCCAAACTGGTAGACTGATCGAGAAGGAAGAGGTTCAACATTTGACCAGAGATGTACTGGAGGAGCTAATAGATACAGTAGGAGGTTTTGATCTTGTCATCGGTGGAAGCCCATGTAATAACCTATCTGGTAACAACAGATTTACCAGAGATGGACTAGAAGGGAAACATTCCGCTGTTTTCTACGAGTTTTCTCGTATTTGGAATGNGGTGACACAAATAATGCGCTCCAGAGGCAT

Ace file of the UniGene uagpf_v2_unigene8931

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30838	3/5
SustainPine v2.0	sp_v2.0_unigene34369	2/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV	-	-	9.99995e-41	67%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	dna methyltransferase	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	gene silencing	GO:0016458	Biological Process	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 144 - 626

Fln protein: RRDLGCHSSVLKPFYPDGLKVLSLFSGIGGAEVALYRIGINLKCVVAVETCRKNRFILRSWWRKTGQTGRLIEKEEVQHLTRDVLEELIDTVGGFDLVIGGSPCNNLSGNNRFTRDGLEGKHSAVFYEFSRIWNEVTQIMRSRG

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGTTCTGAAACCATTTTATCCTGATGGACTGAAAGTACTTTCTCTATTTTCTGGTATTGGTGGTGCAGAGGTTGCTTTGTATCGTATTGGAATAAATTTAAAATGCGTTGTGGCCGTGGAAACATGTCGAAAGAACAGGTTTATTCTTAGGAGTTGGTGGAGGAAAACAGGCCAAACTGGTAGACTGATCGAGAAGGAAGAGGTTCAACATTTGACCAGAGATGTACTGGAGGAGCTAATAGATACAGTAGGAGGTTTTGATCTTGTCATCGGTGGAAGCCCATGTAATAACCTATCTGGTAACAACAGATTTACCAGAGATGGACTAGAAGGGAAACATTCCGCTGTTTTCTACGAGTTTTCTCGTATTTGGAATGaGGTGACACAAATAATGCGCTCCAGAGGCAT

Fln Alignment:

Contig8931___HSSVLKPFYPDGLKVLSLFSGIGGAEVALYRIGINLKCVVAVETCRKNRFILRSWWRKTGQTGRLIEKEEVQHLTRDVLEELIDTVGGFDLVIGGSPCNNLSGNNRFTRDGLEGKHSAVFYEFSRIWNEVTQIMR
Q9M548_______________HLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVRARMR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
52		25	75		0.996473
54	75			25	0.996473
60	75	25			0.996473
61	60	40			1.0
62			80	20	0.995493
64	80	20			0.995493
66		80	20		0.995493
69	20			80	0.995493
71	20	20		60	0.99255
74		80		20	0.995493
76			20	80	0.995493
77	80		20		0.995493
78		20		80	0.995493
80			20	80	0.995493
83	20			80	0.995493
84		20	80		0.995493
85			80	20	0.995493
86		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain