SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8837

Length: 347 nt

UniGene Fasta

>uagpf_v2_unigene8837
CGTCGTGACCTTGGCTGTCACTCAATTTATTCTTTTGTACCCTGGAGGTGCTCGCGAAGCCCTACATCGGCAGGGTGAACAATATAAGCTCTTTTGGCCTGAGAAGGCAGAGTTTGTCCGAATGGCAGCTAGGTTCGTGGCCACTATTATTCCATTCGGCATTGTGGGGGAAGATGATATTGCTGAGGTTTTGCTCGGCTACGAAGAAATGATGCAGATACCCATCTACAATGACATGGTGAAAAAATTGAATAGTGATGTTCAAAACTTAAGGAGTGGAGAATCTGGTGAAGTTGCTAACCAACAAATGTATTTACCATTTGTGGTTCCAAAAACCTCCTGGTCGA

Ace file of the UniGene uagpf_v2_unigene8837

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28753	2/4
SustainPine v2.0	sp_v2.0_unigene33933	1/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	acyltransferase-like protein [Arabidopsis thaliana] sp\|Q9ZVN2.1\|Y1457_ARATH RecName: Full=Acyltransferase-like protein At1g54570, chloroplastic; Flags: Precursor gb\|AAC64874.1\| Contains similarity to gi\|2924495 hypothetical protein Rv1920 from Mycobacteri	-	-	1.0e-33	62%
FL-Next	sp=Acyltransferase-like protein At1g54570, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Blast2go	acyltransferase-like protein	-	-	1.8535e-41	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	1.8535e-41	78%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Diacylglycerol acyltransferase	IPR007130	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVN2

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 115 - 704

Fln protein: VVTLAVTQFILLYPGGAREALHRQGEQYKLFWPEKAEFVRMAARFVATIIPFGIVGEDDIAEVLLGYEEMMQIPIYNDMVKKLNSDVQNLRSGESGEVANQQMYLPFVVPKTSWS

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTATTCTTTTGTACCCTGGAGGTGCTCGCGAAGCCCTACATCGGCAGGGTGAACAATATAAGCTCTTTTGGCCTGAGAAGGCAGAGTTTGTCCGAATGGCAGCTAGGTTCGTGGCCACTATTATTCCATTCGGCATTGTGGGGGAAGATGATATTGCTGAGGTTTTGCTCGGCTACGAAGAAATGATGCAGATACCCATCTACAATGACATGGTGAAAAAATTGAATAGTGATGTTCAAAACTTAAGGAGTGGAGAATCTGGTGAAGTTGCTAACCAACAAATGTATTTACCATTTGTGGTTCCAAAAACCTCCTGGTCGA

Fln Alignment:

Contig8837___ILLYPGGAREALHRQGEQYKLFWPEKAEFVRMAARFVATIIPFGIVGEDDIAEVLLGYEEMMQIPIYNDMVKKLNSDVQ--NLRSGESGEVANQQMYLPFVVPK
Q9ZVN2_______________VLLFPGGAREALHNRGEQYKLIWPEQQEFVRMAARFGATIVPFGTVGEDDIAELVLDYNDLMKIPILNDYITEVTRDTKQFKLREESEGEVANQPLYLPGLIPK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain