SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8808

Length: 963 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8808

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17538	41/43

Source	Descriptions	Term	Type	Identity
AutoFact	SEC12-like protein 1 [Arabidopsis thaliana] sp\|Q8GYE0.2\|PHF1_ARATH RecName: Full=SEC12-like protein 1; AltName: Full=Protein PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1; Short=PHF-1 emb\|CAB41339.1\| putative protein [Arabidopsis thaliana] gb\|ABI49462.1\| At	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	sec12-like protein 1-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	phosphate ion transport	GO:0006817	Biological Process	70%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	70%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
33		75		25	0.996473
34		25	25		0.995533
38	75			25	0.996473
42		25		75	0.996473
43		25	75		0.996473
44			75	25	0.996473
45	75			25	0.996473
46	75		25		0.996473
47		75	25		0.996473
51	75			25	0.996473
53		75		25	0.996473
56		25		75	0.996473
417			20	80	0.995493
424		80	20		0.995493
425	80			20	0.995493
428	80	20			0.995493
430		28	71		1.0
431	14		85		0.993533
435			14	85	0.993533
437	85	14			0.993533
441			14	85	0.993533
451	14			85	0.993533
454		11	88		0.923564
455			11	88	0.923564
456	11			88	0.923564
458			11	88	0.923564
459	77	11		11	0.968132
460	11	77	11		0.968132
462		11		88	0.923564
463	88	11			0.923564
466			11	88	0.923564
467			11	88	0.923564
468		11		88	0.923564
473			88	11	0.923564
476		11		88	0.923564
628		93	6		0.999264
631	93			6	0.999264
632	93		6		0.999264
634		6		93	0.999264
635		6		93	0.999364
637	93			6	0.999364
638			6	93	0.999364
640		6		93	0.999364
645		5		94	0.998578
650		6		93	0.99903
651	6			93	0.99903
761		8		92	0.999718
873		22		77	0.999999
925	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain