SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8662

Length: 966 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8662

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3611	6/10
SustainPine v2.0	sp_v2.0_unigene65373	4/10

Source	Descriptions	Term	Type	Identity
AutoFact	golgi nucleotide sugar transporter 3 [Arabidopsis thaliana] sp\|Q9S845.1\|GONS3_ARATH RecName: Full=GDP-mannose transporter GONST3; AltName: Full=Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 3 gb\|AAF16667.1\|AC012394_16 unknown protein; 69155-70273 [Arabidopsi	-	-	64%
FL-Next	sp=GDP-mannose transporter GONST3; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	gdp-mannose transporter gonst3-like	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	0.0	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	UAA transporter	IPR013657	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9S845

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 266 - 372

Fln protein: MQGIEQGDDVKGSSAPFEEVQQPCLASMRAFMQGAYVYGIVAGYCVSASLLSIINKWAIMKFPFPGSLTAMQYFSSVSGVLILGWLKLLEHDKLDLQTMWRFLPAAMVFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLKQPCPPVKTWCSLAVIFVGGLIYVLTDYHLTMAAYSWALAYLVSMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALLLFPFELIIMGEFQQLKHDSSLQSGLCSFEVLLPVGLSCLFGLS

Protein Length: 267

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTATGCATGCATTCATGTGCGAAGAAGAGCAAGAGCTGATACAAAGTTGGGTTCTCTGTTATTGACAAATACCGAGCAGAGTAGGGTGCACCGTCGTGACCTTGGCTGTCACTCAATTGTATTTTCAGATTCTTCACAG_-_ATGCAGGGGATTGAACAAGGTGACGATGTGAAGGGAAGTTCAGCACCTTTTGAAGAAGTGCAACAACCATGTTTGGCTTCAATGAGAGCATTTATGCAGGGAGCTTATGTTTATGGAATTGTGGCTGGGTATTGTGTTTCTGCATCCCTGTTATCAATCATCAACAAGTGGGCGATCATGAAATTTCCTTTTCCTGGATCTTTGACCGCTATGCAGTATTTTTCAAGTGTGTCAGGAGTACTCATACTTGGCTGGTTGAAACTTTTGGAACATGATAAACTTGATTTACAAACTATGTGGAGATTTTTACCTGCTGCAATGGTCTTCTATTTATCACTGTTCACAAATAGTGAACTACTGCTCCATGCAAATGTTGATACATTTATTGTATTCCGGTCTGCTGTTCCCATCTTTGTTGCCATTGGTGAAACTCTCTTCCTGAAGCAGCCTTGTCCTCCTGTCAAAACTTGGTGTTCTCTAGCCGTTATCTTTGTAGGAGGTTTAATTTATGTGCTAACTGATTATCATCTCACTATGGCAGCTTATAGCTGGGCATTGGCATACTTGGTAAGTATGTCAATAGATTTTGTGTATATTAAGCATGTTGTCATGACAATCGGGTTGAACACTTGGGGTTTGGTGTTGTACAATAATTTGGAGGCCTTACTTCTTTTCCCGTTTGAGTTAATTATTATGGGGGAATTTCAGCAGTTGAAACATGATAGCTCACTGCAATCTGGATTGTGTTCTTTTGAAGTTTTACTGCCAGTTGGGCTATCCTGCTTGTTTGGATTATCCA

Fln Alignment:

Contig8662___DDVKGSSAPFEEVQQPCLASMRA-FMQGAYVYGIVAGYCVSASLLSIINKWAIMKFPFPGSLTAMQYFSSVSGVLILGWLKLLEHDKLDLQTMWRFLPAAMVFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLKQPCPPVKTWCSLAVIFVGGLIYVLTDYHLTMAAYSWALAYLVSMSIDFVYIKHVVMTIGLNTWGXXXXXXXXXXXXFPFELIIMGEFQQLKHDSSLQSGLCSFEVLLPVGLSCLFGLS
Q9S845_______________DEENGTVIEVKNVPEPSPETWYSVFLRQASVYGVAAGYCLSASLLSIINKWAIMKFPYPGALTAMQYFTSAAGVLLCAQMKLIEHDSLNLLTMWRFLPAAMIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLHQPWPSVKTWGSLATIFGGSLLYVFTDYQFTIAAYSWALAYLVSMTIDFVYIKHVVMTIGLNTWGLVLYNNLEALLLFPLELLIMGELKKIKHEITDETDWYSLQVVLPVGLSCLFGLA

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
120	25	75			0.996473
121			75	25	0.996473
132			80	20	0.995493
133			80	20	0.995493
137		20		80	0.995493
139	80		20		0.995493
143		80	20		0.995493
144	80	20			0.995493
471		25	75		0.996473
472	75		25		0.996473
474		25		75	0.996473
475			25	75	0.996473
477			25	75	0.996473
491	75	25			0.996473
495		25		75	0.996473
496	25	75			0.996473
653	60	40			1.0
655		60		40	1.0
659			40	60	1.0
661		40		60	1.0
665			40	60	1.0
667		40		60	1.0
668	60			40	1.0
670			60	40	1.0
671	60	40			1.0
672	40		60		1.0
673		40	60		1.0
675		40		60	1.0
676	40			60	1.0
678	83	16			0.994512
679			16	83	0.994512
681		16		83	0.994512
682	83		16		0.994512
685	16			83	0.994512
686		16	83		0.994512
689	83		16		0.994512
690	83		16		0.994512
696		16		83	0.994512
853		25		75	0.996473
855			75	25	0.996473
856	75	25			0.996473
858		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain