SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8550

Length: 1938 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8550

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8658	8/56
SustainPine v2.0	sp_v2.0_unigene8844	37/56
SustainPine v2.0	sp_v2.0_unigene62510	4/56
SustainPine v2.0	sp_v2.0_unigene65497	5/56

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoenolpyruvate carboxykinase [Flaveria pringlei]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	phosphoenolpyruvate carboxykinase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxykinase (ATP).	EC:4.1.1.49	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	83%
Blast2go	Citrate cycle (TCA cycle)	00020	83%
Blast2go	Pyruvate metabolism	00620	83%
Blast2go	Carbon fixation in photosynthetic organisms	00710	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	gluconeogenesis	GO:0006094	Biological Process	83%
Blast2go	phosphorylation	GO:0016310	Biological Process	83%
Blast2go	kinase activity	GO:0016301	Molecular Function	83%
Blast2go	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACI7

Fln msg: your sequence is longer than subject: 456 - 127

Fln protein: MDEHTFLINRERAVDFLTSLDKVFVNDQFLNWDPDHRLKVRIISARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRFTHYMNSTTTIDLNLTRKEIVILGTQYAGEMKEGLIQCDALPNAQERYFISSFWLQRRDLGCHSNLFFGLSGTGKTTLSTDPNRYLIGDDEHCWSDNGISNIEGGCYAKCIDLSKEKEPEIWNAIKFGTILENVVFDMHTREVDYSDKSITENTRASYPIEFIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLTLAQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFLLLHPAKYAEMLAEKMQKHGTTAWLVNTGWSGGSYGVGQRIKLAYTRRIIDAINNGSLHNANYTETPVFGLHIPDAIEGIPSEILHPENTWSDETAYQETLQKLAGLFQSNFKKFTGYKIGNSSKLTEEILAAGPQ*

Protein Length: 457

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATGGGCCCAAGCGTCGTGACCTTGGCTGTCACTCAGAGTTCAAAGGCTTAAAGCCATTGCTATTGATCACGCTGCCAAGCACGTTGAAGTTCCTTCTACTCTTCCAGACGATGTTGACCTCAAAAGTACTGCTGTTCTATATAATCTCTCTGCAGCAGAGCTATATGAATTTGCTCTCCATGAAGAAGTGATCTTTCGTGACACTCAACTGGGGCCCTAGCAACTCTGTCCGGGGCAAGGACTGGAAGATCTCCTAAAGACAAACGTGTCGTTAACGATGAAGTAACTGCAAATGAGCTTTGGTGGGAAGAAGGCTCACCAAACATTGAA_-_ATGGACGAACACACATTCCTCATCAACCGAGAAAGGGCAGTGGATTTCTTGACATCACTAGATAAGGTTTTTGTAAACGACCAATTCTTGAACTGGGATCCAGACCATCGGCTCAAAGTGCGCATCATTTCAGCACGAGCATATCATTCCCTCTTCATGCATAACATGTGCATACGTCCTACTCCTGAAGAGCTAGAGAACTTTGGGACTCCAGACTTCACCATTTATAATGCAGGGCAATTTCCATGCAACCGGTTCACTCATTATATGAATTCTACGACAACCATTGATTTAAACCTTACCCGAAAAGAAATTGTAATTCTTGGAACCCAATATGCTGGAGAAATGAAAGAAGGGCTTATTCAGTGTGATGCATTACCTAATGCCCAAGAAAGGTATTTTATCTCTTCATTCTGGCTGCAACGTCGTGACCTTGGCTGTCACTCAAACCTATTCTTTGGACTATCAGGAACTGGAAAGACCACACTATCAACAGACCCAAACCGATATTTGATTGGAGATGACGAACATTGCTGGAGTGACAATGGCATATCAAATATTGAAGGAGGGTGCTATGCAAAATGTATTGACCTTTCAAAGGAAAAAGAACCTGAAATCTGGAATGCAATAAAATTTGGAACCATATTGGAGAATGTTGTATTTGATATGCATACAAGAGAGGTGGATTACTCGGACAAATCCATCACTGAGAATACCAGAGCATCATACCCCATAGAGTTCATTCCAAATGCAAAGATTCCATGTGTGGGGCCTCACCCTAAGAATGTCATTCTACTAGCATGTGATGCTTTTGGTGTTCTGCCACCAGTTAGCAAGCTAACACTGGCCCAAACCATGTATCACTTCATCAGTGGTTACACTGCCTTGGTAGCAGGCACTGAAGAAGGAGTTAAGGAGCCACGTGCAACATTTTCTGCTTGTTTTGGAGCAGCGTTCCTTCTGCTGCATCCAGCCAAATATGCAGAAATGCTGGCAGAGAAGATGCAAAAACATGGTACAACAGCATGGCTGGTTAACACTGGGTGGTCTGGTGGAAGCTATGGTGTGGGACAGAGAATCAAGCTTGCTTATACCCGCAGAATCATAGATGCTATAAACAATGGCAGTTTGCATAATGCAAACTATACAGAAACGCCCGTATTTGGCCTGCATATTCCAGATGCTATTGAGGGTATTCCCTCAGAGATATTGCACCCTGAGAACACGTGGTCTGACGAGACGGCTTATCAGGAAACTCTGCAAAAGTTGGCAGGTCTCTTTCAGAGCAATTTTAAGAAATTTACAGGTTATAAAATTGGCAACAGTAGTAAGCTTACTGAAGAAATCCTTGCAGCTGGGCCACAATAG___GTTTTTATACAATCCTATTAATTATGGGAAAAAACATAGTTTGCTGTGGACAATAATAGCAATAAGTACTGTTAGAGCAAAATAAAATATTACTTTCCAAGTTACCTCAAAGGAAACTTGGAAAATCATATTTTATTTATGGTTACAACATGGAATGCAATATTTTATTATGGGCACATGCTCAAATGTTAACATTTTTGGCTTTTTAAAAAGG

Fln Alignment:

Contig8550___MLAEKMQKHGTTAWLVNTGWSGGSYGVGQRIKLAYTRRIIDAINNGSLHNANYTETPVFGLHIPDAIEGIPSEILHPENTWSDETAYQETLQKLAGLFQSNFKKFTGYKIGNSSKLTEEILAAGPQ
D5ACI7_______________MLAEKMQKHGTTGWLVNTGWSSGSYGVGRRIKLQHTRKIIDAIHDGSLLNAQYSKTDVFGLEIPDAIDGVPSEILHPENTWPDKKAYRDTLLKLAGLFRNNFDKFVNYKIGKDSKLTAEIQAAGPQ

SNPs (tot: 203)

Position	A %	C %	G %	T %	Probability
41	33	66			0.997452
44	33		66		0.997452
48	33			66	0.997452
49	33			66	0.997452
56		33	66		0.997452
57		33		66	0.997452
58		66	33		0.997452
60	33	66			0.997452
61	33			66	0.997452
62		66	33		0.997452
63	66		33		0.997452
212	60	40			1.0
214	60			40	1.0
215	60	40			1.0
220		40		60	1.0
224			40	60	1.0
225		60	40		1.0
226		40	60		1.0
230	60			40	1.0
238	40	60			1.0
239		40	20		1.0
284		85	14		0.993533
286	85		14		0.993533
288	85	14			0.993533
289		14	85		0.993533
290	85			14	0.993533
291		85		14	0.993533
292	85		14		0.993533
293	85		14		0.993533
294	85	14			0.993533
295		85		14	0.993533
298		14	85		0.993533
300		42		57	1.0
301	14		85		0.993533
306		57	42		1.0
313			42	57	1.0
315	57		42		1.0
341	50	50			1.0
348	85			14	0.993533
350		85	14		0.993533
351	85			14	0.993533
352	85		14		0.993533
355	85	14			0.993533
360	85		14		0.993533
361	85	14			0.993533
364		14	85		0.993533
366		57		42	1.0
367			85	14	0.993533
368	85	14			0.993533
369	57		42		1.0
372		42		57	1.0
379		87	12		0.992554
381		62		37	1.0
382	50		50		1.0
385	87		12		0.992554
387		50		50	1.0
389			85	14	0.993533
390	85			14	0.993533
393	85		14		0.993533
394	85	14			0.993533
395			85	14	0.993533
397			85	14	0.993533
400		14	85		0.993533
402		14	85		0.993533
403	14		85		0.993533
420	25	12	62		1.0
424	87		12		0.992554
426		12	87		0.992554
427		12	87		0.992554
430			12	87	0.992554
431		12		87	0.992554
432		11		88	0.923564
435	55		22		0.999999
436	77	22			0.999999
437	88		11		0.923564
438		66		33	1.0
440	88			11	0.923564
441		77		22	0.999999
442	11	88			0.923564
444	88			11	0.923564
446			11	88	0.923564
447		22	11	66	0.999999
448		11		88	0.923564
451	88	11			0.923564
460		22		77	0.999999
465		22		77	0.999999
474		22	77		0.999999
487	90		10		0.90298
489			10	90	0.90298
491		90	10		0.90298
493		10	90		0.90298
495	90			10	0.90298
496		90		10	0.90298
503	90		10		0.90298
507		10		90	0.90298
511	10	90			0.90298
513		20	80		0.999996
567			20	80	0.999996
784		75		25	0.996473
785	25		75		0.996473
789			25	75	0.996473
793	25	75			0.996473
794	25			75	0.996473
795			25	75	0.996473
797	25		75		0.996473
798	25	75			0.996473
799			25	75	0.996473
801	25			75	0.996473
802		75	25		0.996473
804		75		25	0.996473
805			25	75	0.996473
806		75		25	0.996473
807	75		25		0.996473
822	75	25			0.996473
843		25		75	0.996473
867	25		75		0.996473
888	25		75		0.996473
895		18		81	0.999994
897			81	18	0.999994
898	81	18			0.999994
904	81	18			0.999994
905	81			18	0.999994
909		45		54	1.0
910	81		18		0.999994
912	54	45			1.0
942	54		45		1.0
963	40		60		1.0
969	60		40		1.0
975	40		60		1.0
990	50	50			1.0
1038	57		42		1.0
1053	50		50		1.0
1077	50	50			1.0
1080	50		50		1.0
1089		60		40	1.0
1100	40			60	1.0
1129		16	83		0.994512
1131			83	16	0.994512
1133		83	16		0.994512
1135		83	16		0.994512
1142	83			16	0.994512
1144	83		16		0.994512
1145	83	16			0.994512
1151		16		83	0.994512
1394		25	75		0.996473
1398	75		25		0.996473
1401	75	25			0.996473
1402		75		25	0.996473
1406		25	25	50	0.995533
1410		25	75		0.996473
1411	25			75	0.996473
1414		25	75		0.996473
1415	25		75		0.996473
1419	25		75		0.996473
1431	50		50		1.0
1443		50	50		1.0
1458		33	66		0.997452
1468	33		66		0.997452
1496	33			66	0.997452
1497			66	33	0.997452
1522		10	70	20	0.999998
1523			10	90	0.90298
1524	50		20	30	1.0
1525		10	20	70	0.999998
1526		20	10	70	0.999998
1529	10		70	20	0.999998
1533		20	80		0.999996
1534	20	70	10		0.999998
1535	70	10	20		0.999998
1537	70		30		1.0
1544	90	10			0.90298
1547		80		20	0.999996
1548	10			90	0.90298
1549	70		30		1.0
1557		33		66	1.0
1563		66	33		1.0
1573		33		66	1.0
1600	25		75		1.0
1604	25	75			1.0
1609		11		88	0.923564
1610	88		11		0.923564
1615			88	11	0.923564
1616	88		11		0.923564
1618	88	11			0.923564
1621		22		77	0.999999
1622		88		11	0.923564
1624			11	88	0.923564
1628	88			11	0.923564
1629	88		11		0.923564
1630	88			11	0.923564
1631	88	11			0.923564
1632	11		88		0.923564
1633		11		88	0.923564
1650	25	75			1.0
1651	75		25		1.0
1670		28		71	1.0
1689	90		10		0.999898
1690	90			10	0.999898
1699	85		15		1.0
1712	90		10		0.999898
1715		90		10	0.999898
1724	8		4	86	0.999539
1727	9		90		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain