SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8396

Length: 560 nt

UniGene Fasta

>uagpf_v2_unigene8396
CGTCGTGACCTTGGCTGTCACTCAGGTTTACTTGAAGAAGGCATCATGAAGTCACTTCAAGGTTTAATCAGCCTGCGTCCACATACTCCAAATTCAAGACAGCAGCGTGTATTTGCACAAAGGTGGAAAAATTTACAAACAGACAATATGGTTAACGCCTCCTTGAATGCATTTGGACTATATGCTTATGACAGTATATTGATGATTGCTCACTCTCTCAACACCTACTTCAAACAAGGAGGAAATATCTCTTTTGCAGAACCATCTTCTCTATCAAGTCAGAGCGGAGGCAAATCAGAACTAGCAGAACTGAAGGTCTTTGAAGGAGGAGCACAGTTACAAAAGATAATATTACAAACTAATTTCAACGGCATTGCAGGTCCTGTACTCTTGGACAAAAATGGGAACTTGATGAGCTCTGCATTTGAGATTATCAATGTAGTTGGTAAAGGCTTCCGCAGCATTGGTTTCTGGTCAAACCAAACTGGTTTATCAGTTACCCCTCCAGAATATACAGCTACCATCAGTAATAATGAATCTCATATAAATCTAACAGTCTC

Ace file of the UniGene uagpf_v2_unigene8396

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14158	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=1 Tax=Populus trichocarpa RepID=B9H685_POPTR	-	-	1.0e-39	44%
FL-Next	sp=Glutamate receptor 3.1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	40%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	5.60519e-45	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	5.60519e-45	64%
Blast2go	cellular process	GO:0009987	Biological Process	5.60519e-45	64%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	5.60519e-45	64%
Blast2go	transporter activity	GO:0005215	Molecular Function	5.60519e-45	64%
Blast2go	membrane	GO:0016020	Cellular Component	5.60519e-45	64%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XP59

Fln msg: Distance to subject end: 493 aas, your sequence is shorter than subject: 186 - 938

Fln protein: RRDLGCHSGLLEEGIMKSLQGLISLRPHTPNSRQQRVFAQRWKNLQTDNMVNASLNAFGLYAYDSILMIAHSLNTYFKQGGNISFAEPSSLSSQSGGKSELAELKVFEGGAQLQKIILQTNFNGIAGPVLLDKNGNLMSSAFEIINVVGKGFRSIGFWSNQTGLSVTPPEYTATISNNESHINLTV

Protein Length: 187

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTACTTGAAGAAGGCATCATGAAGTCACTTCAAGGTTTAATCAGCCTGCGTCCACATACTCCAAATTCAAGACAGCAGCGTGTATTTGCACAAAGGTGGAAAAATTTACAAACAGACAATATGGTTAACGCCTCCTTGAATGCATTTGGACTATATGCTTATGACAGTATATTGATGATTGCTCACTCTCTCAACACCTACTTCAAACAAGGAGGAAATATCTCTTTTGCAGAACCATCTTCTCTATCAAGTCAGAGCGGAGGCAAATCAGAACTAGCAGAACTGAAGGTCTTTGAAGGAGGAGCACAGTTACAAAAGATAATATTACAAACTAATTTCAACGGCATTGCAGGTCCTGTACTCTTGGACAAAAATGGGAACTTGATGAGCTCTGCATTTGAGATTATCAATGTAGTTGGTAAAGGCTTCCGCAGCATTGGTTTCTGGTCAAACCAAACTGGTTTATCAGTTACCCCTCCAGAATATACAGCTACCATCAGTAATAATGAATCTCATATAAATCTAACAGTCTC

Fln Alignment:

Contig8396___LEEGIMKSLQGLISLRPHTPNSRQQRVFAQRWKNLQTDNMVNAS--LNAFGLYAYDSILMIAHSLNTYFKQGGNISFAEPXXXXXXXXXXXELAELKVFEGGAQLQKIILQTNFNGIAGPVLLDKNGNLMSSAFEIINVVGKGFRSIGFWSNQTGLSVTPPE
Q7XP59_______________LDIGLLSTMQGVLTLRHHTENTRRKSMLSSKWSELLKEDSGHSRFLLSTYGLYAYDTVWMLAHALDAFFNSGGNISFSPDPKLNEISGRGLNLEALSVFDGGQLLLEKIHQVDFLGATGPVKFDSGGNLIQPAYDIVSIIGSGLRTVGYWSNYSGLSVISPE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
89		83	16		0.994512
90	83			16	0.994512
91	83		16		0.994512
94		16		83	0.994512
96	83			16	0.994512
97	83			16	0.994512
99	83		16		0.994512
101	83			16	0.994512
105			83	16	0.994512
107	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain