SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8390

Length: 861 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8390

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2478	2/9
SustainPine v2.0	sp_v2.0_unigene4182	2/9
SustainPine v2.0	sp_v2.0_unigene34314	3/9

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat protein [Solanum lycopersicum]	-	-	84%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	93%
Blast2go	wd40 repeat-containing protein smu1	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	0.0	91%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	91%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9RVW5

Fln msg: Separated hits, possible frame ERROR between 744 and 747, Distance to subject end: 271 aas, your sequence is shorter than subject: 242 - 513

Fln protein: MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSLETFVADINSGRWDVILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMGFMKQEQPERYLRLEHLLVRTYFDPREAYHESSKEKRRSQIAQALASEVTVVPPSRLMALIGQSLKWQQHQGLLPPGTQFDLFRGTAAVKADEEEMYPxxLARSLKFGKQSHPECARFSPDGQYLVSCSVDGFIEVWD

Protein Length: 243

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAAGTCAATGCGACGGGTTAATTCTGAACTGAAATACAAAGGCCAAGAATAACAAAGTAGGAGCGCCGTCGGTGCTCCGTCAAGCCGGCGGTC_-_ATGTCCACCCTCGAAATCGAAGCTCGCGATGTTATAAAAATTGTGCTACAATTTTGCAAAGAGAATTCTTTGCACCAAACATTTCAAACACTGCAAAACGAATGCCAGGTTTCTCTTAATACTGTGGACAGCCTTGAAACATTTGTAGCAGATATCAATAGCGGAAGATGGGATGTGATACTGCCACAAGTTGCACAGCTTAAGCTTCCTAGAAAGAAGCTAGAAGACTTGTATGAACAGATTGTATTGGAGATGATTGAACTTCGAGAATTAGACACTGCAAGAGCTATTCTAAGGCAGACTCAAGCAATGGGTTTCATGAAGCAGGAGCAACCTGAGCGCTATCTACGCCTGGAACACCTTCTAGTTCGCACATACTTTGATCCTCGTGAGGCTTATCACGAGTCATCAAAAGAGAAGAGGCGGTCACAAATAGCTCAAGCTTTGGCATCCGAAGTAACTGTTGTGCCGCCTTCTCGATTAATGGCCTTGATTGGTCAATCTTTGAAGTGGCAGCAACATCAAGGATTACTCCCTCCAGGTACACAGTTTGACCTCTTCAGGGGCACTGCAGCAGTGAAGGCAGATGAGGAAGAAATGTATCCAACxxxACTGGCACGTTCGCTTAAATTTGGGAAACAAAGCCACCCAGAATGTGCTCGCTTCTCTCCAGATGGTCAATACCTTGTCTCTTGCTCAGTTGATGGATTCATAGAGGTCTGGGACT

Fln Alignment:

Contig8390___MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSLETFVADINSGRWDVILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMGFMKQEQPERYLRLEHLLVRTYFDPREAYHESSKEKRRSQIAQALASEVTVVPPSRLMALIGQSLKWQQHQGLLPPGTQFDLFRGTAAVKADEEEMYPTxLARSLKFGKQSHPECARFSPDGQYLVSCSVDGFIEVWD
A9RVW5_______________MSTLEIEARDVIKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSLETFTADINNGRWDAVLPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMGFMKQEQPERYLKLEHLLVRTYFDPREAYQESSKEKRRAQIAQALSVEVTVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFKGAAAVKADEEEIYPTxLDHTIKFGKQSHPECARFSPDGQFLVSSSVDGFIEVWD

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
377	83		16		0.994512
378			83	16	0.994512
379	83	16			0.994512
380			16	83	0.994512
383		16		83	0.994512
384	83	16			0.994512
389	83	16			0.994512
390			83	16	0.994512
391	83		16		0.994512
393		16	83		0.994512
396		16		83	0.994512
397	16		83		0.994512
400		83		16	0.994512
482	80	20			0.995493
483			20	80	0.995493
484		80		20	0.995493
485			20	80	0.995493
490		80		20	0.995493
494	80	20			0.995493
495	80			20	0.995493
496		80	20		0.995493
497	80			20	0.995493
499	20	80			0.995493
500		20		80	0.995493
503	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain