SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8383

Length: 726 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8383

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3527	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	Syntaxin n=1 Tax=Nicotiana tabacum RepID=B7X6S7_TOBAC	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	syntaxin 33	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	79%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	79%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	79%
Blast2go	SNAP receptor activity	GO:0005484	Molecular Function	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
14	66			33	0.997452
17		33		66	0.997452
19	66		33		0.997452
21	66	33			0.997452
23		33		66	0.997452
26		33	66		0.997452
328	87	12			0.992554
329		87		12	0.992554
330			87	12	0.992554
331		11	88		0.923564
333		11		88	0.923564
334		11		88	0.923564
337		11	11	77	0.968132
341		11	77		0.968132
342		11		88	0.923564
343	88			11	0.923564
347		88	11		0.923564
349	88	11			0.923564
350	11	88			0.923564
354	11	88			0.923564
408			85	14	0.993533
602	80		20		0.995493
605	80			20	0.995493
608			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain