SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8289

Length: 487 nt

UniGene Fasta

>uagpf_v2_unigene8289
CGTCGTGACCTTGGCTGTCACTCAGTTTTTGTTTGGTAATTGGCCCTTTGTTAACGGAGTGGGCTCTTCCTTCGGCTTAGATGACATTCTGCAAAATCCATCGAAGAGTTGTACTTGGCCTCGTTAGTTGAGATTATGCCACATCCGTGGTTGCATATGATATTCAGCGTGAAGAAAAAAGAGTACAGAAAGAAGTCAAGGATGCAGCAAAGCGGAATGACATGACGTCGGCAAAGAATTTGGCAAAAGAAATTGTAAGATCGAGGCAAGCTGTTCAGCGCCTTTATGAGAACAGGGCACAGCTGAATTCGATATCTATGCACCTTGGAGAAAGTGTTGCAACTGCTCGGGCTGTTGGACACTTGTCAAAAAGTACTGAGGTGATGAAGCTCGTGAATGGCCTCATGAAGGCTCCAGAGTGGCTGCCACATGCAAGAATTCACCACAGAGATGACTAAGGCAGGAGTCATTGAGGAGGTGGTGAATG

Ace file of the UniGene uagpf_v2_unigene8289

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24099	5/6
SustainPine v2.0	sp_v2.0_unigene81649	1/6

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana] sp\|Q9FFB3.1\|VP241_ARATH RecName: Full=Vacuolar protein sorting-associated protein 24 homolog 1; Short=AtVPS24-1; AltName: Full=Charged multivesicular body protein 3 homolog 1; AltName	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	vacuolar protein sorting-associated protein 24 homolog 1-like	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA16

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 109 - 223

Fln protein: DYATSVVAYDIQREEKRVQKEVKDAAKRNDMTSAKNLAKEIVRSRQAVQRLYENRAQLNSISMHLGESVATARAVGHLSKSTEVMKLVNGLMKAPEWLPHARIHHRDD*

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTGTTTGGTAATTGGCCCTTTGTTAACGGAGTGGGCTCTTCCTTCGGCTTAGATGACATTCTGCAAAATCCATCGAAGAGTTGTACTTGGCCTCGTTAGTTGAGATTATGCCACATCCGTGGTTGCATATGATATTCAGCGTGAAGAAAAAAGAGTACAGAAAGAAGTCAAGGATGCAGCAAAGCGGAATGACATGACGTCGGCAAAGAATTTGGCAAAAGAAATTGTAAGATCGAGGCAAGCTGTTCAGCGCCTTTATGAGAACAGGGCACAGCTGAATTCGATATCTATGCACCTTGGAGAAAGTGTTGCAACTGCTCGGGCTGTTGGACACTTGTCAAAAAGTACTGAGGTGATGAAGCTCGTGAATGGCCTCATGAAGGCTCCAGAGTGGCTGCCACATGCAAGAATTCACCACAGAGATGACTAAGGCAGGAGTCATTGAGGAGGTGGTGAATG

Fln Alignment:

Contig8289___IQREEKRVQKEVKDAAKRNDMTSAKNLAKEIVRSRQAVQRLYENRAQLNSISMHLGESVATARAVGHLSKS-TEVMKLVNGLMKAP
D5AA16_______________LQNQEKKLIAEIKKTAKQGQMAAVKVMAKDLIRTRHQITKFYALKSQLQGISLRI-QTLKSTQSMGEAMKGVTKAMRQMNRQMNLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain