SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8288

Length: 2220 nt

UniGene Fasta

>uagpf_v2_unigene8288
CGTCGTGACCTTGGCTGTCACTCAAGTCTTCGTCAATAAAAGACTTGTGCGGATGTTGCACTGGTAGGTTGATCCTCATGTTTTCGAAAGTAATTTCTGGGTTTTATAAGGGTTTCCACTGCTAGATCCGTTCACTTCTTGCCATAAATTGTGCCGATCTGCAGCATTTTGGATACCCTTTGCCAAGAATACTCTCAGTTGATGCTTGGAGCCATCTTACCGTGCTTCACAATTGCAGAACCGGAGTTTCAACATAAAACAACTATATACTGGAGATGCGTTGAATAGAAACCCTAGCGAATTCAGGACTAATTTAGAAATGCAATGACTGGGAAATCGAAAATAGAATTGAACTCAGTAATGGCACCTCTAAGTCTAAAGCTTGAAACCCTGCAGCGTCTCCATGAGGAATTTGAGGCTCAAAACCAAACAACAGGAGCTACTGCTGCGCGTGGGGATTCTCTGTCTGATCTATATCCTCGCATTTATAACGAGATTGTTTAGTGTGCTTCGCTATGAAAGCATGATCCACGAATTCGATCCGTATTTCAACTACAGAACCACTCTATACTTGACGGAAAAAGGTTTCTACGAGTTCTGGAATTGGTTCGATTTCGAGAGCTGGTATCCCCTTGGTAGAATCATTGGAGGAACCCTTTATCCTGGTCTTATGGTCACGGCTGCTCTTCTTTACTGGACTCTCAGATTGCTCAGCTTTGCAGTGCACATAAGAGAAGTTTGTGTGTTGACGGCACCGTTTTTTGCATCAAATACTACTCTGGTTGCTTATTTTTTCGGTAAGGAGATTTGGGATTCCGGTGCCGGACTTGCAGCAGCGGCTTTGATTGCCATTTGTCCCGGTTATATTTCTCGGTCTGTTGCCGGGTCGTACGATAATGAAGGGGTGGCGATCTTTGCCCTGCTTTTAACTTTCTACCTGTTTGTGAAAGCTGTTAACACTGGATCCTTGGCCTGGTCGGTCGCCTCGGCTTTCGCTTACTTTTATATGGTGTCTGCGTGGGCAGGTTATATTTTCATCATCAATTTAATTCCTATCTATGTCGTGGTGCTTCTGGTGACTGGGAGATATTCATTGCGATTGTACATTGCATACAATTGCATGTACATCCTGGGAATGCTTCTTGCGATGCAGATCCGATTTGTAGGCTTTCAGCATGTGCAGTCTGGCGAGCACATGGCTGCCATGGGGGTCACTTTTTCTTGTTACAGGTATTTTATTTTGTAGATTGGGTTAAACATCAGCTAGATGATCCAAAACTCTTTCAAGCTTTTTTGAAGATAACTGTGACTAGTGCAGTAGGAGTAGGGGCACTAACACTTGGACTTGGCATGGCTTCTGGTTATATCTCTCCCTGGACTGGACGTTTCTACTCGCTTCTTGATCCAACATATGCAAAAGATCATATACCAATCATTGCCTCTGTCTCAGAGCATCAACCAACAGCTTGGTCATCATTTATGTTTGACTTTCACATCTTGCTTTTCTTCTTTCCGGCGGGGCTCTACTTTTGTTTCAAAAGATTGACAGATGCCACTATTTTTGTTGTGCTATATGGCCTCACTAGCTTATATTTTGCTGGAGTGATGGTACGTCTGATCCTTGTCGCAGCTCCAGCTATGTGCCTTATTAGTGCTATAGCAATATCTTCAACTATGAAAAACTTGGCCACTCTGGTTCGCAGTAAGCCTAAATCTGCATCTACGGCTGCCAGCAAAGGCTCAAGTAATGTCAAGGCATCTGCCAAGGTGTCTTCAGATCAGTCATTGCCATTCCAGAGAAAGGGTGCAGGCATCGTACTCTTAGGTGTACTTTACTTACTTACGAGATATGTCATCCACTGCACCTGGGTGACATCAGAGGCATATTCATCTCCCTCTATCGTTCTCGCTGCTAGGGGTGCCCATGGTGAGAGGGTTATCTTTGATGACTATCGTGAAGCGTACTTCTGGCTGCGGCAAAATACCCCTCCTGATGCCAAGGTAATGTCGTGGTGGGACTATGGATATCAAATCACGGCAATGGGAAACAGAACTGTTATTGTTGACAACAATACATGGAACAATACACACATTGCCACTGTTGGGCGGGCGATGTCATCATATGAGCATGAAGCCTACGAGATCATGCAATCACTTGATGTGGATTATGTGTTGGTTGTATTTGGAGGTGTTACTGGTTATTCTTCTGATGACATTAAC

Ace file of the UniGene uagpf_v2_unigene8288

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8681	47/49

Source	Descriptions	Term	Type	Identity
AutoFact	dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis thaliana] gb\|AAG12524.1\|AC015446_5 Putative integral membrane protein [Arabidopsis thaliana] gb\|AEE31675.1\| dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabido	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	90%
Blast2go	Various types of N-glycan biosynthesis	00513	90%
Blast2go	Metabolic pathways	01100	90%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	90%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	90%
Blast2go	plastid	GO:0009536	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligosaccharyl transferase, STT3 subunit	IPR003674	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABH2

Fln msg: your sequence is longer than subject: 281 - 169

Fln protein: MRNLRLKTKQQELLLRVGILCLIYILAFITRLFSVLRYESMIHEFDPYFNYRTTLYLTEKGFYEFWNWFDFESWYPLGRIIGGTLYPGLMVTAALLYWTLRLLSFAVHIREVCVLTAPFFASNTTLVAYFFGKEIWDSGAGLAAAALIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWSVASAFAYFYMVSAWAGYIFIINLIPIYVVVLLVTGRYSLRLYIAYNCMYILGMLLAMQIRFVGFQHVQSGEHMAAMGVTFSCYRYFIL*

Protein Length: 282

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTCTTCGTCAATAAAAGACTTGTGCGGATGTTGCACTGGTAGGTTGATCCTCATGTTTTCGAAAGTAATTTCTGGGTTTTATAAGGGTTTCCACTGCTAGATCCGTTCACTTCTTGCCATAAATTGTGCCGATCTGCAGCATTTTGGATACCCTTTGCCAAGAATACTCTCAGTTGATGCTTGGAGCCATCTTACCGTGCTTCACAATTGCAGAACCGGAGTTTCAACATAAAACAACTATATACTGGAGATGCGTTGAATAGAAACCCTAGCGAATTCAGGACTAATTTAGAAATGCAATGACTGGGAAATCGAAAATAGAATTGAACTCAGTAATGGCACCTCTAAGTCTAAAGCTTGAAACCCTGCAGCGTCTCC_-_ATGAGGAATTTGAGGCTCAAAACCAAACAACAGGAGCTACTGCTGCGCGTGGGGATTCTCTGTCTGATCTATATCCTCGCATTTATAACGAGATTGTTTAGTGTGCTTCGCTATGAAAGCATGATCCACGAATTCGATCCGTATTTCAACTACAGAACCACTCTATACTTGACGGAAAAAGGTTTCTACGAGTTCTGGAATTGGTTCGATTTCGAGAGCTGGTATCCCCTTGGTAGAATCATTGGAGGAACCCTTTATCCTGGTCTTATGGTCACGGCTGCTCTTCTTTACTGGACTCTCAGATTGCTCAGCTTTGCAGTGCACATAAGAGAAGTTTGTGTGTTGACGGCACCGTTTTTTGCATCAAATACTACTCTGGTTGCTTATTTTTTCGGTAAGGAGATTTGGGATTCCGGTGCCGGACTTGCAGCAGCGGCTTTGATTGCCATTTGTCCCGGTTATATTTCTCGGTCTGTTGCCGGGTCGTACGATAATGAAGGGGTGGCGATCTTTGCCCTGCTTTTAACTTTCTACCTGTTTGTGAAAGCTGTTAACACTGGATCCTTGGCCTGGTCGGTCGCCTCGGCTTTCGCTTACTTTTATATGGTGTCTGCGTGGGCAGGTTATATTTTCATCATCAATTTAATTCCTATCTATGTCGTGGTGCTTCTGGTGACTGGGAGATATTCATTGCGATTGTACATTGCATACAATTGCATGTACATCCTGGGAATGCTTCTTGCGATGCAGATCCGATTTGTAGGCTTTCAGCATGTGCAGTCTGGCGAGCACATGGCTGCCATGGGGGTCACTTTTTCTTGTTACAGGTATTTTATTTTGTAG___ATTGGGTTAAACATCAGCTAGATGATCCAAAACTCTTTCAAGCTTTTTTGAAGATAACTGTGACTAGTGCAGTAGGAGTAGGGGCACTAACACTTGGACTTGGCATGGCTTCTGGTTATATCTCTCCCTGGACTGGACGTTTCTACTCGCTTCTTGATCCAACATATGCAAAAGATCATATACCAATCATTGCCTCTGTCTCAGAGCATCAACCAACAGCTTGGTCATCATTTATGTTTGACTTTCACATCTTGCTTTTCTTCTTTCCGGCGGGGCTCTACTTTTGTTTCAAAAGATTGACAGATGCCACTATTTTTGTTGTGCTATATGGCCTCACTAGCTTATATTTTGCTGGAGTGATGGTACGTCTGATCCTTGTCGCAGCTCCAGCTATGTGCCTTATTAGTGCTATAGCAATATCTTCAACTATGAAAAACTTGGCCACTCTGGTTCGCAGTAAGCCTAAATCTGCATCTACGGCTGCCAGCAAAGGCTCAAGTAATGTCAAGGCATCTGCCAAGGTGTCTTCAGATCAGTCATTGCCATTCCAGAGAAAGGGTGCAGGCATCGTACTCTTAGGTGTACTTTACTTACTTACGAGATATGTCATCCACTGCACCTGGGTGACATCAGAGGCATATTCATCTCCCTCTATCGTTCTCGCTGCTAGGGGTGCCCATGGTGAGAGGGTTATCTTTGATGACTATCGTGAAGCGTACTTCTGGCTGCGGCAAAATACCCCTCCTGATGCCAAGGTAATGTCGTGGTGGGACTATGGATATCAAATCACGGCAATGGGAAACAGAACTGTTATTGTTGACAACAATACATGGAACAATACACACATTGCCACTGTTGGGCGGGCGATGTCATCATATGAGCATGAAGCCTACGAGATCATGCAATCACTTGATGTGGATTATGTGTTGGTTGTATTTGGAGGTGTTACTGGTTATTCTTCTGATGACATTAAC

Fln Alignment:

Contig8288___LLRVGILCLIYILAFITRLFSVLRYESMIHEFDPYFNYRTTLYLTEKGFYEFWNWFDFESWYPLGRIIGGTLYPGLMVTAALLYWTLRLLSFAVHIREVCVLTAPFFASNTTLVAYFFGKEIWDSXXXXXXXXXXXXCPGYISRSVAGSYDN
D5ABH2_______________VLSTAILILVAILAFSIRLFSVIKYESVIHEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNALNIPLSVETVCVFTAPIFSANAAWATYLLKKEVKGIGAGLTAATILAMVPSYISRSVAGSYDN

SNPs (tot: 139)

Position	A %	C %	G %	T %	Probability
47		33		66	0.997452
53		33	66		0.997452
54			66	33	0.997452
55	66			33	0.997452
56			33	66	0.997452
58		33		66	0.997452
67		33	66		0.997452
68	33			66	0.997452
79		75	25		0.996473
80	25			75	0.996473
82	75	25			0.996473
86			25	75	0.996473
87			25	75	0.996473
88		25		75	0.996473
89		75		25	0.996473
91	75			25	0.996473
92	75	25			0.996473
94		25	75		0.996473
96	75	25			0.996473
102			25	75	0.996473
126		75	25		0.996473
144		14		85	0.993533
146		85		14	0.993533
148	85		14		0.993533
151	85	14			0.993533
152	85	14			0.993533
159		85		14	0.993533
164		14		85	0.993533
165			85	14	0.993533
226			42	57	1.0
289	40		60		1.0
302		40		60	1.0
322	50			50	1.0
340	50		50		1.0
399	66		22	11	0.999999
400			77	22	0.999999
401		88		11	0.923564
402		11	22		0.999999
403	11			88	0.923564
404		77	22		0.999999
405	22			77	0.999999
407	11	88			0.923564
408	77			22	0.999999
412	75	25			1.0
413			75	25	1.0
415	75			25	1.0
416	75	25			1.0
417	25			75	1.0
418		25		75	1.0
420		25	75		1.0
423			75	12	0.975346
526	71	28			1.0
530	71		28		1.0
537	71			28	1.0
538		71		28	1.0
540	71		28		1.0
541	71	28			1.0
548		28		71	1.0
549		71		28	1.0
551	28		71		1.0
584			80	20	0.995493
585			80	20	0.995493
586	80	20			0.995493
587	80		20		0.995493
588	80	20			0.995493
597			20	80	0.995493
598	80			20	0.995493
601	80			20	0.995493
603	20			80	0.995493
604		20		80	0.995493
610	80	20			0.995493
611	80			20	0.995493
612			20	80	0.995493
614		20	80		0.995493
615	20		80		0.995493
616		20		80	0.995493
620	20		80		0.995493
655		40		60	1.0
688	50		50		1.0
748		50		50	1.0
784		33		66	0.997452
830		28		71	1.0
831	14		85		0.993533
832		71		28	1.0
845	71			28	1.0
852			71	28	1.0
853		28	71		1.0
854	28	71			1.0
902		83		16	0.994512
918		16	83		0.994512
921		16	83		0.994512
923		83		16	0.994512
926		16		83	0.994512
930			16	83	0.994512
933		83		16	0.994512
934		83	16		0.994512
936		16	83		0.994512
937	33	66			1.0
938		16		83	0.994512
940		16		83	0.994512
941	16			83	0.994512
977		14	85		0.993533
980	85		14		0.993533
981	14			85	0.993533
993		14	85		0.993533
994	14			85	0.993533
997		14	85		0.993533
998	14		85		0.993533
1068	88	11			0.923564
1069			11	88	0.923564
1072		88	11		0.923564
1075		11		88	0.923564
1076		77		22	0.999999
1081			11	88	0.923564
1085	11		88		0.923564
1086		11	88		0.923564
1088		11	88		0.923564
1089	11	88			0.923564
1376			12	87	0.992554
1379		25		75	1.0
1381		12	87		0.992554
1384	87		12		0.992554
1385			12	87	0.992554
1386	87	12			0.992554
1388		87	12		0.992554
1391	12			87	0.992554
1393		87		12	0.992554
1395	12			87	0.992554
1474	83		16		0.994512
1477	83		16		0.994512
1478	83			16	0.994512
1479		16	16		0.988813
1482	75	8	16		0.99999
1483	75			25	1.0
1484		75	16	8	0.99999
1486		16	75	8	0.99999
1490		9	18		0.999994
1599			83	16	0.994512
1906	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain