SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8283

Length: 258 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene8283
CGTCGTGACCTTGGCTGTCACTCAGTAGGCTTTCGTCGTGACCTTGGCTGTCACTCATTATTGTTGTTTTCCACTAAAGCGGAGCCCCTGTATGAGACGCTAGTTTATGATCCAAATTCTCTGCCAGGTTCAGAGTGGCAGGTTACATCTATTAGACCCTCTGGCACTTGTATGTGTAGTGTGACTATCACAGCCTGAGATGGATTTCTGGGAATTGGCTGATACCATCTTTTCTGAGGTTTTGCTTATGTTTCGACG

Ace file of the UniGene uagpf_v2_unigene8283 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28134	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/kelch-repeat protein [Arabidopsis thaliana] ref\|NP_001077785.1\| F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|Q9CAG8.1\|FBK28_ARATH RecName: Full=F-box/kelch-repeat protein At1g67480 gb\|AAG52295.1\|AC011020_2 unknown protein [Arabidopsis thalia	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	f-box family protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX50

Fln msg: your sequence is shorter than subject: 66 - 386

Fln protein: RRDLGCHSVGFRRDLGCHSLLLFSTKAEPLYETLVYDPNSLPGSEWQVTSIRPSGTCMCSVTITA*

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAGGCTTTCGTCGTGACCTTGGCTGTCACTCATTATTGTTGTTTTCCACTAAAGCGGAGCCCCTGTATGAGACGCTAGTTTATGATCCAAATTCTCTGCCAGGTTCAGAGTGGCAGGTTACATCTATTAGACCCTCTGGCACTTGTATGTGTAGTGTGACTATCACAGCCTGA___GATGGATTTCTGGGAATTGGCTGATACCATCTTTTCTGAGGTTTTGCTTATGTTTCGACG

Fln Alignment:

Contig8283___GCHSVGFRRDLGCHSLLLFSTKAEPLYETLVYDPNSLPGSEWQVTSIRPSGTCMCSVTITA
A9NX50_______________GSVTVGFCFGILNGNLLLFPTKMEPLCKTLVYDPNAMPGLEWQAIDIRPLGICICTVTITA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
203		20		80	0.995493
204			80	20	0.995493
205	80			20	0.995493
206			80	20	0.995493
207		20		80	0.995493
208		20	80		0.995493
210		80		20	0.995493
211	80			20	0.995493
213	20	80			0.995493
214		80	20		0.995493
217			80	20	0.995493
218	20		80		0.995493
219		20		80	0.995493
222	20	80			0.995493
223	20		80		0.995493
226	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain