SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8265

Length: 750 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8265

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13014	4/8
SustainPine v2.0	sp_v2.0_unigene66140	4/8

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinases-like protein [Arabidopsis thaliana] ref\|NP_001078307.1\| Cysteine proteinases-like protein [Arabidopsis thaliana] sp\|Q8LBZ4.1\|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gb\|AAM63953.1\| unknown [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	cysteine proteinases-like protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	Mur ligase, central	IPR013221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
26	66			33	0.997452
29		33	66		0.997452
30		33		66	0.997452
33			33	66	0.997452
34			33	66	0.997452
35	66	33			0.997452
39	66			33	0.997452
40		33	66		0.997452
43		33	66		0.997452
44	66			33	0.997452
45		33	66		0.997452
46	33		66		0.997452
89		25	75		0.996473
90			25	75	0.996473
93			25	75	0.996473
97		25		75	0.996473
98	75	25			0.996473
102			25	75	0.996473
103		25		75	0.996473
104			75	25	0.996473
106			75	25	0.996473
110			75	25	0.996473
111		25	75		0.996473
112	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain