SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8217

Length: 1552 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8217

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9091	32/39
SustainPine v2.0	sp_v2.0_unigene61908	5/39

Source	Descriptions	Term	Type	Identity
AutoFact	reticulon-like protein B8 [Arabidopsis thaliana] ref\|NP_850551.1\| reticulon-like protein B8 [Arabidopsis thaliana] sp\|Q9SS37.1\|RTNLH_ARATH RecName: Full=Reticulon-like protein B8; Short=AtRTNLB8 gb\|AAF02816.1\|AC009400_12 unknown protein [Arabidopsis thali	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	reticulon-like protein b8	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-
Sma3	Ribonuclease CAF1	IPR006941	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPJ1

Fln msg:

Fln protein: MGENYGKVTAENLLNNVMETLADKLPKSIQNSSSSNFIESNEKPSVSVSFDRLFGRQKPVHHILGGGQSADVLLWRNKRISGSVLAGATVIWMLFEWLNYHFLTLLCLAVVLSMTALFLWSNAAILINRSPPRMRPIALPKDIFVDAAIALSDQINRFLGFLQEVAIGRDVKTFLAVSAGLWFLAIIGSWCNLLTILYIGFVAAHTLPVLYERYEDQVDSFIYYILDEMKRHYGRFDSKVLRRIPKGPAKKGHKFQ*

Protein Length: 258

Fln nts: TTTCGTCGTGACCTTGGCTGTCACTCAAATCGATCGTCATTTCCATCTTCTGCCTCAAGAAACAAAACGAAGGAACCTGGAATATCTTGAACAGACCGTCGAATCGGTTGCTTTGAGCAGTTTTCAGACGCCACTGAAATCTTTTCGGAAGCTTTGAAATACAAATCTGAAAGTAGCATTCGTTTTACAAATCAGAGACCAAGCCGTCTTAAAGACCTCTTTGTAGTTTCGATCAGGTTTACTAGAAATC_-_ATGGGGGAAAATTACGGAAAGGTAACTGCCGAAAATCTTCTGAACAATGTTATGGAAACACTTGCGGATAAACTCCCAAAATCCATCCAAAATTCCAGCTCGTCGAACTTTATTGAAAGTAACGAGAAACCTTCTGTATCTGTGTCATTCGACCGGCTCTTCGGACGCCAGAAGCCTGTGCATCATATACTCGGTGGAGGCCAATCTGCCGATGTCTTGCTATGGAGAAACAAGCGAATATCTGGCAGTGTTCTTGCAGGTGCCACTGTCATATGGATGCTCTTTGAATGGCTGAATTACCACTTCCTTACACTTCTTTGCCTCGCTGTGGTTCTCTCCATGACAGCTTTGTTCCTCTGGTCAAATGCCGCAATTTTAATCAACAGGTCTCCGCCAAGGATGCGCCCAATTGCTCTCCCTAAGGATATTTTCGTTGATGCTGCTATTGCTCTAAGTGATCAAATCAACAGATTTTTAGGGTTTCTACAAGAAGTTGCAATAGGAAGAGATGTGAAGACATTTCTGGCGGTCTCAGCAGGGCTATGGTTTCTTGCTATAATTGGCAGTTGGTGCAATCTCTTAACTATATTGTACATAGGGTTTGTTGCTGCACACACATTGCCTGTGCTGTATGAGAGATATGAAGACCAAGTGGACTCCTTTATTTATTACATATTAGATGAAATGAAGCGGCACTACGGGAGATTTGATTCCAAAGTTTTGAGAAGAATCCCAAAAGGCCCTGCGAAGAAGGGACATAAATTTCAGTAG___GTGGTAAATTGCAATGCGGGCATCCTGTGGCATATTTGTTATGAAGTTTCGATAGTCTATTTCTTACTTGCTAAGATGCTAGCAACATTTATTTGCACAATTGAGTGCAATTGGTTTACAGGAGACTTATAATGCCTTATTTTCTCAAGAACATTTACATCATATAGTTCAGGATGTCTGCGAAATGAGGAGGCTCTCTTCATGCATTGAATAGGGAAAAGCAACACTGCCAGTTGTTTGAAATGCTGCGTTCTTAACACAATATTAACGGTGCACCCTTGTAAATGTCCCGATTTTATTAAGTCTGAGAGAATGTTTGCTGGTAAAGTTTTTGGGCACATATAAACTTTGTTGGAGATATTGTTGATTTTGTTTGGGAGTCATTTTTAATCAGGAACTGGCTTGGTAGTTGTTCTAGTGAGTCATGTTCCATATTTGACAGATATGGGTTTCATTCTGATGTGAAATATATATCCCGAGTGTAAATCAATTCTAAAGAGATTAGTTGGTTACTTTCTTCATTCTTCTTGA

Fln Alignment:

Contig8217___AENLLNNVMETLADKLP----KXXXXXXXXXXXXXXXKP---SVSVSFDRLFGRQKPVHHILGGGQSADVLLWRNKRISGSVLAGATVIWMLFEWLNYHFLTLLCLAVVLSMTALFLWSNAAILINRSPPRMRPIALPKDIFVDAAIALSDQINRFLGFLQEVAIGRDVKTFLAVSAGLWFLAIIGSWCNLLTILYIGFVAAHTLPVLYERYEDQVDSFIYYILDEMKRHYGRFDSKVLRRIPKGPAK
B8LPJ1_______________AASFLDSVMEKVAEKLPGHDSSSSDSDDEKSKKPESKKPEPSSISSSVKRLFGREKPVHTLFGGGKSADVILWRNKQTSAGVLAGATVMWLLFEWLGYYLLTLICHVLILGITILFVWSNASAFINKQPVRIPQISFSEQLFQDVASALRFEINRLFTVIHDVASGRDLKKFLMVVAGLWILSVIGSWANFLTLFYVAFVFAHTVPVLYEKYEDQVDAFTFKAMDEAKKHYGTFDAKVLSKIPRGPLK

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
19		14		85	0.993533
23	71			14	0.984337
24		71	14	14	0.984337
26		71	28		1.0
28	85	14			0.993533
29	85	14			0.993533
31		85		14	0.993533
33	85		14		0.993533
34		14		85	0.993533
35		85		14	0.993533
41		14		85	0.993533
44	14	85			0.993533
835			42	57	1.0
837	57	42			1.0
840	57			42	1.0
841			42	57	1.0
842	57		42		1.0
843		42		57	1.0
852	57	14			1.0
853	14		57		1.0
854		28	71		1.0
855	28		71		1.0
895		11		88	0.923564
896	88		11		0.923564
898		11	88		0.923564
899	88		11		0.923564
900	88			11	0.923564
905	88			11	0.923564
906	88			11	0.923564
910		11	88		0.923564
913			10	90	0.90298
914		90		10	0.90298
916			11	88	0.923564
918			11	88	0.923564
920		11		88	0.923564
921		11		88	0.923564
925			11	88	0.923564
926	88		11		0.923564
930	88		11		0.923564
932		11		88	0.923564
935	88	11			0.923564
938	88	11			0.923564
943	88			11	0.923564
944	88			11	0.923564
990	70		30		1.0
991	70			30	1.0
992	70	30			1.0
993	70		30		1.0
994			70	30	1.0
996	30	70			1.0
1000			70	30	1.0
1001		70	30		1.0
1003	70	30			1.0
1004	70			30	1.0
1006	70	20			0.999998
1007	90			10	0.90298
1008		30	70		1.0
1009	10		70	20	0.999998
1010		30	70		1.0
1011	90			10	0.90298
1117	85	14			0.999981
1118			14	85	0.999981
1120		14		85	0.999981
1122		85	14		0.999981
1126	85	14			0.999981
1130	84		15		0.999986
1131		15	84		0.999986
1136	84	15			0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain