SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8180

Length: 2018 nt

UniGene Fasta

>uagpf_v2_unigene8180
CGTCGTGACCTTGGCTGTCACTCAGTTCGGCTCTCACCTCCGTCGAAGAAATAGCTAAGATACAACAGATTTTAAAGGAAATCTTGAACCAAGAATTATCATGGCAAGGAACCGACTGGAAGTATTAAATGCTTTGGACGTAGCAAGAACGCAATGGTACCACTTTACTGCCGTCGTGACCTTGGCTGTCACTCAGCTTCTTCACGGATGCCTATGACTTGTTCTGCATTTCAACAGTCACGAAGCTCCTGGGAAGGATTTATTACTTCGATCCGAGCAGCAAGAGTCCCGGTTCTCTGCCTCCAAATGTCTCAGCTGCTGTGAACGGGGTGGCCTTATGCGGAACACTGGCCGGACAACTTTTCTTTGGTTGGATGGGCGACAAACTGGGACGGAAGAAAGTTTATGGAGTAACGCTCATGATCATGGTTATTACTTCCATAGCGTCTGGCCTTTCGTTCGGTAGCACAGCCAAATCCGTAATGACCACGCTCTGCTTTTTCAGATTCTGGCTCGGCTTTGGCATCGGCGTCGTTACCTTGTCTGTCACCAAATGTCGGAATATGCCAACAAGAAAACCCGAGGGGCGTTCATCGCAGCAGTCTTTGCTATGCAAGGCTTCGGGATTCTTGCCGGCGGTGCGGTGGCCATTATCGTCTCCACAGCATTCAACAAGAAGTACGAACGTCCTGTATATCAGGATGATCCTCGAGGTTCGACTGCTCATGAAGCCGATTATGTGTGGCGGATCATTCTGATGTTCGGAGCTGTTCCGGCTGCTTTGACATACTACTGGCGAATGAAAATGCCGGAAACGGCTCGCTACACTGCTCTCGTCGCAAGAAACGTAAAGCAAGCCGCGGCCGACATGTCCAAGGTTCTTGAGGTTGGCTTTGACTCAGATATCCGAGTAGATGAAGTGGTTGCAAAGAACGACTTGGGGTTCGCTTTATTTTCAAAAGAGTTTGCAAGGCGACATGGCCTACATCTATTGGGGACTGCAAGCACATGGTTTCTGTTCGATATCGCTTTCTACAGCCAAAATCTTTTCCAGAAGGACATCTTCACTTCTGTGGGATGGCTTCCCTCAGCCAAGTCAATGAATGCAATAGAAGAAGTTTATAAAATAGCTAGAGCGCAGTCGATTATTGCTCTGAGTTCGACAGTCCCAGGCTACTGGTTCACAGTCGCATTCGTGGACCACATAGGCAGGTTTACAATTCAACTGCTAGGATTCTTCTTCATGACGGTCTTCATGTTCGCGCTCGCTATTCCATACGACCACTGGCGGGGTACCAAATGTGACAGCGGCTACTGCGGCGGCAATCACGGGGCCTTCGTTATACTTGTATGTCCCTCACCTTCTTCTTTTCAAACTTCGGTCCAAACACCACCACCTTCATTGTACCTGCTGAAATCTTTCCCGCGAGGCTTCGCTCCACATGCCACGGCATATCGGCGGCAGCAGGTAAAGCGGGAGCCATTGTCGGAGCCTTTGGTTTTCTCTACGCCGCTCAGAGCACTCATGCTGCCCAGGTGGACAAAGGCTACCCGACGGGTATTGGCGTTAAGAATTCTCTGATTCTCTTAGGGGTAACAAATGCCCTTGGTTCCCTTTTCACATTCCTTGTCCCTGAAACAAATGGCAAATCCCTAGAGGAGCTATCTGGCGAAAACGGTGAAGAGCAAGGAGTCGAACTGGAACGCACTCATTCCAGACGCAGAACTGCACCAATTGAATAGCTGGATAATCTGAATTTACTGGAACAAAGTTGTGAAAAAATATTTTAACAGTAAGTGCAATAAGCTAATCTAGTCTTCTACAGCACTATTATAGATGTTTGTTTGTATTTCTACTCTCCAGACGCTATATATCTACTATGTTCGCATTTTAAACTTTTAGAGTGCATAACTTTCCCTTCCATTCCTTATTTTGCAGAACACTATTTTACAGGTTGTATGATAGATGTAAGTGTGATTGTTCATAGCGTTTTTCACTTAGATGTAAACTGAACTGA

Ace file of the UniGene uagpf_v2_unigene8180

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16549	44/58
SustainPine v2.0	sp_v2.0_unigene18578	3/58

Source	Descriptions	Term	Type	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA	-	-	75%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	73%
Blast2go	phosphate transporter	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-
Sma3	Phosphate permease	IPR004738	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: Separated hits, possible frame ERROR between 178 and 207, and possible frame ERROR between 1348 and 1354,

Fln protein: MARNRLEVLNALDVARTQWYHFTAVxxxxxxxxxxxDAYDLFCISTVTKLLGRIYYFDPSSKSPGSLPPNVSAAVNGVALCGTLAGQLFFGWMGDKLGRKKVYGVTLMIMVITSIASGLSFGSTAKSVMTTLCFFRFWLGFGIGVVTLSVTKCRNMPTRKPEGRSSQQSLLCKASGFLPAVRWPLSSPQHSTRSTNVLYIRMILEVRLLMKPIMCGGSF*CSELFRLL*HTTGE*KCRKRLATLLSSQET*SKPRPTCPRFLRLALTQISE*MKWLQRTTWGSLYFQKSLQGDMAYIYWGLQAHGFCSISLSTAKIFSRRTSSLLWDGFPQPSQ*MQ*KKFIK*LERSRLLL*VRQSQATGSQSHSWTT*AGLQFNC*DSSS*RSSCSRSLFHTTTGGVPNVTAATAAAITGPSLxxxCPSPSSFQTSVQTPPPSLYLLKSFPRGFAPHATAYRRQQVKREPLSEPLVFSTPLRALMLPRWTKATRRVLALRIL*FS*G*QMPLVPFSHSLSLKQMANP*RSYLAKTVKSKESNWNALIPDAELHQLNSWII*

Protein Length: 554

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCGGCTCTCACCTCCGTCGAAGAAATAGCTAAGATACAACAGATTTTAAAGGAAATCTTGAACCAAGAATTATC_-_ATGGCAAGGAACCGACTGGAAGTATTAAATGCTTTGGACGTAGCAAGAACGCAATGGTACCACTTTACTGCCGTCGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGATGCCTATGACTTGTTCTGCATTTCAACAGTCACGAAGCTCCTGGGAAGGATTTATTACTTCGATCCGAGCAGCAAGAGTCCCGGTTCTCTGCCTCCAAATGTCTCAGCTGCTGTGAACGGGGTGGCCTTATGCGGAACACTGGCCGGACAACTTTTCTTTGGTTGGATGGGCGACAAACTGGGACGGAAGAAAGTTTATGGAGTAACGCTCATGATCATGGTTATTACTTCCATAGCGTCTGGCCTTTCGTTCGGTAGCACAGCCAAATCCGTAATGACCACGCTCTGCTTTTTCAGATTCTGGCTCGGCTTTGGCATCGGCGTCGTTACCTTGTCTGTCACCAAATGTCGGAATATGCCAACAAGAAAACCCGAGGGGCGTTCATCGCAGCAGTCTTTGCTATGCAAGGCTTCGGGATTCTTGCCGGCGGTGCGGTGGCCATTATCGTCTCCACAGCATTCAACAAGAAGTACGAACGTCCTGTATATCAGGATGATCCTCGAGGTTCGACTGCTCATGAAGCCGATTATGTGTGGCGGATCATTCTGATGTTCGGAGCTGTTCCGGCTGCTTTGACATACTACTGGCGAATGAAAATGCCGGAAACGGCTCGCTACACTGCTCTCGTCGCAAGAAACGTAAAGCAAGCCGCGGCCGACATGTCCAAGGTTCTTGAGGTTGGCTTTGACTCAGATATCCGAGTAGATGAAGTGGTTGCAAAGAACGACTTGGGGTTCGCTTTATTTTCAAAAGAGTTTGCAAGGCGACATGGCCTACATCTATTGGGGACTGCAAGCACATGGTTTCTGTTCGATATCGCTTTCTACAGCCAAAATCTTTTCCAGAAGGACATCTTCACTTCTGTGGGATGGCTTCCCTCAGCCAAGTCAATGAATGCAATAGAAGAAGTTTATAAAATAGCTAGAGCGCAGTCGATTATTGCTCTGAGTTCGACAGTCCCAGGCTACTGGTTCACAGTCGCATTCGTGGACCACATAGGCAGGTTTACAATTCAACTGCTAGGATTCTTCTTCATGACGGTCTTCATGTTCGCGCTCGCTATTCCATACGACCACTGGCGGGGTACCAAATGTGACAGCGGCTACTGCGGCGGCAATCACGGGGCCTTCGTTATAxxxxxxATGTCCCTCACCTTCTTCTTTTCAAACTTCGGTCCAAACACCACCACCTTCATTGTACCTGCTGAAATCTTTCCCGCGAGGCTTCGCTCCACATGCCACGGCATATCGGCGGCAGCAGGTAAAGCGGGAGCCATTGTCGGAGCCTTTGGTTTTCTCTACGCCGCTCAGAGCACTCATGCTGCCCAGGTGGACAAAGGCTACCCGACGGGTATTGGCGTTAAGAATTCTCTGATTCTCTTAGGGGTAACAAATGCCCTTGGTTCCCTTTTCACATTCCTTGTCCCTGAAACAAATGGCAAATCCCTAGAGGAGCTATCTGGCGAAAACGGTGAAGAGCAAGGAGTCGAACTGGAACGCACTCATTCCAGACGCAGAACTGCACCAATTGAATAGCTGGATAATCTGA___ATTTACTGGAACAAAGTTGTGAAAAAATATTTTAACAGTAAGTGCAATAAGCTAATCTAGTCTTCTACAGCACTATTATAGATGTTTGTTTGTATTTCTACTCTCCAGACGCTATATATCTACTATGTTCGCATTTTAAACTTTTAGAGTGCATAACTTTCCCTTCCATTCCTTATTTTGCAGAACACTATTTTACAGGTTGTATGATAGATGTAAGTGTGATTGTTCATAGCGTTTTTCACTTAGATGTAAACTGAACTGA

Fln Alignment:

Contig8180___MARNRLEVLNALDVARTQWYHFTAVVxxxxxxxxxxDAYDLFCISTVTKLLGRIYYFDPSSKSPGSLPPNVSAAVNGVALCGTLAGQLFFGWMGDKLGRKKVYGVTLMIMVITSIASGLSFGSTAKSVMTTLCFFRFWLGFGIGxxSLTFFFSNFGPNTTTFIVPAEIFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQSTHAAQVDKGYPTGIGVKNSLILLGVTNALGSLFTFLVPETNGKXXXXXXXXXXXXQGVELERTHSRRRTAP
Q1XG57_______________MAKTQLEVLNALDLAKTQWYHFTAIIxxxxxxxxxxDAYDLFCISTVTKLLGRIYYFE-DGKKPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICSIASGLSFGHTAKSVMTTLCFFRFWLGFGIGxxSFTFFFANFGPNATTFIVPAEVFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSTHQSEVDHGYHKGIGVKNSLILLGVTNAMGFLFTFLVPETNGKSLEELSGENEEDEGTELPPSVSTTRTAP

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
172	33	66			0.997452
173	33		66		0.997452
176	33		66		0.997452
178			66	33	0.997452
187	33			66	0.997452
189			33	66	0.997452
194		66	33		0.997452
195	66		33		0.997452
750		20		80	0.995493
752			80	20	0.995493
760	80	20			0.995493
764			20	80	0.995493
766	80	20			0.995493
772	25		75		0.996473
773		25	75		0.996473
774	75			25	0.996473
775		25	75		0.996473
776	25	75			0.996473
886		50	50		1.0
887			50	50	1.0
890			50	50	1.0
892		50	50		1.0
894		50	50		1.0
895		50	50		1.0
897	50			50	1.0
899	50		50		1.0
901	50			50	1.0
902			50	50	1.0
904		50	50		1.0
906	50	50			1.0
907			50	50	1.0
962		14		85	0.993533
963	85		14		0.993533
964		16		83	0.994512
1195	83		16		0.994512
1196		83		16	0.994512
1197	83	16			0.994512
1200		83	16		0.994512
1201	16		83		0.994512
1203	83	16			0.994512
1206		83	16		0.994512
1210		16	83		0.994512
1216	85		14		0.993533
1218	85	14			0.993533
1220			85	14	0.993533
1221		85	14		0.993533
1223		14	85		0.993533
1224		14	85		0.993533
1227			14	85	0.993533
1228	85		14		0.993533
1231	85			14	0.993533
1232			14	85	0.993533
1236	85			14	0.993533
1238	14			85	0.993533
1310	62	37			1.0
1311	62		37		1.0
1319	62	37			1.0
1320			62	37	1.0
1321		62		37	1.0
1326	62		12		1.0
1327		62	25	12	1.0
1328		12		87	0.992554
1329	12		62		1.0
1331			62	12	1.0
1332	28	14	57		1.0
1333	14	85			0.993533
1334			71	14	0.984337
1336		14	71	14	0.984337
1338	14	85			0.993533
1353	8		41	50	1.0
1358			41	58	1.0
1361	58	41			1.0
1366			41	58	1.0
1367	58	41			1.0
1372	41	58			1.0
1394			13	86	0.999973
1399	13			86	0.999973
1403	86			13	0.999973
1404	86			13	0.999973
1405		86	13		0.999973
1406	86		13		0.999973
1408		86		13	0.999973
1409	86		13		0.999973
1410		86		13	0.999973
1577	92	8			0.999718
1629		70		25	1.0
1820	80		20		0.995493
1822	80			20	0.995493
1823	80	20			0.995493
1863		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain