SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8136

Length: 745 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8136

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12039	15/17

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RI48_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	gtp-binding protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Uncharacterised domain, carbohydrate kinase-related	IPR000631	-	-
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3		IPR002917	-	-
Sma3	Conserved hypothetical protein CHP00092	IPR004396	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	Domain of unknown function DUF933	IPR013029	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
86		66	33		0.997452
87		66		33	0.997452
89	66		33		0.997452
90	66			33	0.997452
94		33	66		0.997452
101	66			33	0.997452
104		33		66	0.997452
106		33		66	0.997452
222		11	88		0.923564
224	88			11	0.923564
225	88	11			0.923564
226	88		11		0.923564
227	88			11	0.923564
230		11		88	0.923564
232	88			11	0.923564
233			11	88	0.923564
235		11		88	0.923564
242	88	11			0.923564
243			88	11	0.923564
244	88	11			0.923564
335		88	11		0.923564
337			12	87	0.992554
339	87		12		0.992554
341	87	12			0.992554
343		87		12	0.992554
344	87			12	0.992554
345	87		12		0.992554
353	85	14			0.993533
354	85			14	0.993533
356	88		11		0.923564
357	88			11	0.923564
358	88	11			0.923564
362	88		11		0.923564
364		11		88	0.923564
365		11		88	0.923564
372		11	88		0.923564
373	11			88	0.923564
374		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain