SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8116

Length: 348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene8116
CGTCGTGACCTTGGCTGTCACTACTTCGATTCAATGAGTAGAGAGTATGGCATCTCACCAACAATGGAACATTATGCCTGCATTGTTGATCTTCTTGGACGTGCAGGACACTTGGACAAGGCTGAGGCTTGCATAAACAACATGCCATTTGAACCCAGTGCTTTAGTTTGGCAAACTTTACTTGGTGCATGCAAAATCCATGGTAACACAGAGATGGGCAAACGTGTGGCAGATCGTTTATTAGAGCTGGAACCCCAAGACTCTGCAACATATGTTCTTCTGTCGAATTTATATGCTGCAGCTGGTAGGTGGGATGATAGAACTAAGGTGAGGAAAATGATGGAAAAT

Ace file of the UniGene uagpf_v2_unigene8116 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18864	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide-like helical n=1 Tax=Medicago truncatula RepID=Q1SN04_MEDTR	-	-	2.0e-37	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.96182e-44	76%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Nuclear control of ATP synthase 2	IPR013946	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 116 - 370

Fln protein: RRDLGCHYFDSMSREYGISPTMEHYACIVDLLGRAGHLDKAEACINNMPFEPSALVWQTLLGACKIHGNTEMGKRVADRLLELEPQDSATYVLLSNLYAAAGRWDDRTKVRKMMEN

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTACTTCGATTCAATGAGTAGAGAGTATGGCATCTCACCAACAATGGAACATTATGCCTGCATTGTTGATCTTCTTGGACGTGCAGGACACTTGGACAAGGCTGAGGCTTGCATAAACAACATGCCATTTGAACCCAGTGCTTTAGTTTGGCAAACTTTACTTGGTGCATGCAAAATCCATGGTAACACAGAGATGGGCAAACGTGTGGCAGATCGTTTATTAGAGCTGGAACCCCAAGACTCTGCAACATATGTTCTTCTGTCGAATTTATATGCTGCAGCTGGTAGGTGGGATGATAGAACTAAGGTGAGGAAAATGATGGAAAAT

Fln Alignment:

Contig8116___DLGCHYFDSMSREYGISPTMEHYACIVDLLGRAGHLDKAEACINNMPFEPSALVWQTLLGACKIHGNTEMGKRVADRLLELEPQDSATYVLLSNLYAAAGRWDDRTKVRKMMEN
A9P0W0_______________DEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain