SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8113

Length: 435 nt

UniGene Fasta

>uagpf_v2_unigene8113
CGTCGTGACCTTGGCTGTCACGCTGGGGTGGAGCTCGCTCTTGATCACATGCATTCTCCGTTCCTGAAACCCACGAATGATCCGTCGTGCTTTCATAATCTGGAGGCTTATCTCCACCTGGTGGACGGATACCATGGACGAGGGCAGCGCTTCTATCTGTCTTCGCGCCGCGATCCGGCTTTGGTGAATAAGGCATGCAATTTCCTGAAGGAAGACTACCTAGTTCCTCCCTTCTGGTGGCAGGACGCAAACAAAGGACTGATCAAGAACTCCGAGGGTCGGTGGGTTCAGCCGGAGAGAATGAGAATCATCGAAGAGAAGTCGCATACAGATCACCACAAGACTCCCGATCATAGTAACGACATCACCGACATCACCATTGAGCATCTCCAATGTAGTGTCGCAGAGTCTATTTAGCATTGAAACCACTAAGAA

Ace file of the UniGene uagpf_v2_unigene8113

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35925	3/6
SustainPine v2.0	sp_v2.0_unigene67545	3/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG3675 Predicted lipase	-	-	5.0e-07	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	lipase class 3 family protein	-	-	0.0	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipase A(1).	EC:3.1.1.32	-	0.0	74%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerophospholipid metabolism	00564		74%
Blast2go	alpha-Linolenic acid metabolism	00592		74%
Blast2go	Metabolic pathways	01100		74%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	74%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		74%
Blast2go	Metabolic pathways	01100		74%
Blast2go	Galactolipase.	EC:3.1.1.26	-	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine 1-acylhydrolase activity	GO:0008970	Molecular Function	74%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	74%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE3

Fln msg: your sequence is shorter than subject: 139 - 554

Fln protein: RRDLGCHAGVELALDHMHSPFLKPTNDPSCFHNLEAYLHLVDGYHGRGQRFYLSSRRDPALVNKACNFLKEDYLVPPFWWQDANKGLIKNSEGRWVQPERMRIIEEKSHTDHHKTPDHSNDITDITIEHLQCSVAESI*

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACGCTGGGGTGGAGCTCGCTCTTGATCACATGCATTCTCCGTTCCTGAAACCCACGAATGATCCGTCGTGCTTTCATAATCTGGAGGCTTATCTCCACCTGGTGGACGGATACCATGGACGAGGGCAGCGCTTCTATCTGTCTTCGCGCCGCGATCCGGCTTTGGTGAATAAGGCATGCAATTTCCTGAAGGAAGACTACCTAGTTCCTCCCTTCTGGTGGCAGGACGCAAACAAAGGACTGATCAAGAACTCCGAGGGTCGGTGGGTTCAGCCGGAGAGAATGAGAATCATCGAAGAGAAGTCGCATACAGATCACCACAAGACTCCCGATCATAGTAACGACATCACCGACATCACCATTGAGCATCTCCAATGTAGTGTCGCAGAGTCTATTTAG___CATTGAAACCACTAAGAA

Fln Alignment:

Contig8113___CHAGVELALDHMHSPFLKPTNDPSCFHNLEAYLHLVDGYHGRGQRFYLSSRRDPALVNKACNFLKEDYLVPPFWWQDANKGLIKNSEGRWVQPERMRIIEEKSH--TDHHKTPDHSNDIT--DITIE-HLQCSVAESI
B8LKE3_______________CHVGVKLVLDHTQSPFLKPTNDSSCFHNLEAHLHLLDGYHGRGQRFCLTSRRDPALVNKSCDFLKEHHLVPPFWRQDANKGLIQNSEGRWVQPERIRIIEE-SHMDPDHHETVSHSENQVRPDVAINGHSQPSVLQQL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
148		60	40		1.0
195	60		40		1.0
247			33	66	0.997452
319	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain