SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8075

Length: 535 nt

UniGene Fasta

>uagpf_v2_unigene8075
CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGATCCTTGGCTGTCACTCATTTTAGCGGATGTCCAAACTTTCGGCTATCTGATACAGGCTTTTTGCAAGGAAGGGAAGCTGAGAGAAGCTCGTGAACTGCTTGATGAAGTTTTGGAGAATGGTTGGGTTCCGGATGTGTTTACTTTCAATGAAATTATCGGCCAGTTTAGCAGGCAAGGCCGGTTTAGGAGGGTTTCCGAGATGTTGCATTTGATGATTGCGAAGGGGTGTATGCCTGACATACGGACATATACTGTGATTTTAGACGGGCTTTGTAAGAATGGTAGGGTTGAGCAGGGTTTGTGGCTTTTTGATGATTTGAAGGAGAGAGGGTATGACCCTGATGTCGTTACATATACTGTTTTGCTGGATGGCCTTTGTAAGATAGGTAAAATGGAAGCTGCCGGGGAGCTTTGGTTCGAAATGCATAGGAAAGGATTGAGTCCGAATAAGTTCACGTATAATGTGCTTATTGATGGGCACTGTAAGCAGGGGAATATGAA

Ace file of the UniGene uagpf_v2_unigene8075

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene647	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9FIX3.1\|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745 dbj\|BAB11377.1\| unnamed protein product [Arabidopsi	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	pentatricopeptide repeat-containing	-	-	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 60 aas, your sequence is shorter than subject: 177 - 700

Fln protein: S*PWLSLNRRDPWLSLILADVQTFGYLIQAFCKEGKLREARELLDEVLENGWVPDVFTFNEIIGQFSRQGRFRRVSEMLHLMIAKGCMPDIRTYTVILDGLCKNGRVEQGLWLFDDLKERGYDPDVVTYTVLLDGLCKIGKMEAAGELWFEMHRKGLSPNKFTYNVLIDGHCKQGNM

Protein Length: 178

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGATCCTTGGCTGTCACTCATTTTAGCGGATGTCCAAACTTTCGGCTATCTGATACAGGCTTTTTGCAAGGAAGGGAAGCTGAGAGAAGCTCGTGAACTGCTTGATGAAGTTTTGGAGAATGGTTGGGTTCCGGATGTGTTTACTTTCAATGAAATTATCGGCCAGTTTAGCAGGCAAGGCCGGTTTAGGAGGGTTTCCGAGATGTTGCATTTGATGATTGCGAAGGGGTGTATGCCTGACATACGGACATATACTGTGATTTTAGACGGGCTTTGTAAGAATGGTAGGGTTGAGCAGGGTTTGTGGCTTTTTGATGATTTGAAGGAGAGAGGGTATGACCCTGATGTCGTTACATATACTGTTTTGCTGGATGGCCTTTGTAAGATAGGTAAAATGGAAGCTGCCGGGGAGCTTTGGTTCGAAATGCATAGGAAAGGATTGAGTCCGAATAAGTTCACGTATAATGTGCTTATTGATGGGCACTGTAAGCAGGGGAATATGAA

Fln Alignment:

Contig8075___DVQTFGYLIQAFCKEGKLREARELLDEVLENGWVPDVFTFNEIIGQFSRQGRFRRVSEMLHLMIAKG
B8LL58_______________NLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
27		60	40		1.0
29	40			60	1.0
32	40			60	1.0
36		66		33	1.0
39			33	66	1.0
41	33		66		1.0
42	33	66			1.0
48		66	33		1.0
49			33	66	1.0
50		66	33		1.0
51	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
27		60	40		1.0
29	40			60	1.0
32	40			60	1.0
36		66		33	1.0
39			33	66	1.0
41	33		66		1.0
42	33	66			1.0
48		66	33		1.0
49			33	66	1.0
50		66	33		1.0
51	66			33	1.0

Position	A %	C %	G %	T %	Probability
27		60	40		1.0
29	40			60	1.0
32	40			60	1.0
36		66		33	1.0
39			33	66	1.0
41	33		66		1.0
42	33	66			1.0
48		66	33		1.0
49			33	66	1.0
50		66	33		1.0
51	66			33	1.0

Position	A %	C %	G %	T %	Probability
27		60	40		1.0
29	40			60	1.0
32	40			60	1.0
36		66		33	1.0
39			33	66	1.0
41	33		66		1.0
42	33	66			1.0
48		66	33		1.0
49			33	66	1.0
50		66	33		1.0
51	66			33	1.0