SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene8005

Length: 1031 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene8005

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6543	32/32

Source	Descriptions	Term	Type	Identity
AutoFact	cellulose synthase 6 [Populus tremuloides]	-	-	86%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	81%
Blast2go	cellulose synthase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	92%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	92%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	92%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 68 aas, your sequence is shorter than subject: 343 - 1096

Fln protein: S*PWLSLKQEKKKKKSKRSDASLPIFNSEDIEVVEGVDSEKLAFISQIKLEKKFGQSPVFVASTLLENGGVPQNASPASLLKEAIHVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPPRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPVWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAICLLTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDDDDFSELYAFKWTTLLIPPTTLLIVNLIGVVAGVSNAINNGYESWGPLF

Protein Length: 344

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAAGAAAAGAAGAAGAAGAAATCCAAGCGCAGTGACGCCAGTCTTCCTATATTCAATTCAGAGGACATAGAAGTAGTAGAAGGAGTTGACAGTGAAAAGTTAGCATTCATATCTCAGATTAAATTGGAAAAGAAATTTGGACAGTCCCCTGTCTTTGTTGCCTCTACTCTTCTTGAGAATGGTGGTGTACCACAAAATGCTAGTCCTGCTTCACTTCTAAAAGAAGCCATTCATGTTATTAGCTGTGGCTATGAAGATAAAACAGACTGGGGAAAGGAGGTTGGATGGATTTATGGTTCGGTTACAGAGGATATATTGACAGGCTTCAAAATGCATTGCCATGGATGGCGGTCTATTTATTGTATTCCTCCAAGGCCAGCATTCAAAGGGTCTGCTCCAATTAATCTCTCAGATCGTCTACACCAAGTTTTGCGTTGGGCTCTTGGATCAGTTGAAATTTTCCTGAGCAGACACTGTCCTGTTTGGTATGGATATGGAGGGGGTCTGAAATGGTTGGAGAGGCTGTCTTATATAAATGCAACCGTATACCCATGGACATCCATACCTCTGGTGGCATACTGTACCTTGCCAGCTATATGTTTGCTTACAGGAAAATTCATTATTCCAGAGCTCAGTAATATAGCGAGTCTTTGGTTTCTTGCCCTCTTTATCTGTATCTTCACAACTGGCATCCTAGAGATGCGGTGGAGTGGTGTTCCAATTGATGACTGGTGGAGAAACGAACAATTTTGGGTGATTGGAGGTGTGTCTGCACATTTGTTTGCTGTTTTCCAAGGGTTGTTGAAAGTTCTTGCTGGTGTTGATACAAATTTTACTGTGACATCAAAAGCTGGGGATGATGATGATTTTTCAGAGCTATATGCATTTAAGTGGACAACCCTATTGATTCCCCCCACAACACTACTTATAGTGAACCTAATTGGAGTTGTTGCTGGGGTATCTAATGCCATTAATAATGGATATGAGTCATGGGGCCCTCTGTTC

Fln Alignment:

Contig8005___PIFNS-EDIEV-VEGVDSEKLAFISQIKLEKKFGQSPVFVASTLLENGGVPQNASPASLLKEAIHVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPPRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPVWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAICLLTGKFIIPELSNIASLWFLALFICIFTTGILEMRWSGVPIDDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAGDD-DDFSELYAFKWXXXXXXXXXXXXVNLIGVVAGVSNAINNGYESWGPLF
Q4VWW7_______________PIFSSLEDIEGGVEGFDDEKSPLVFQKSLEKKFGQSLVFVASTQMENGGVPQSATPADLLKEAIHVISCGYEDKSDWGKEIGWIYGSVTEDILTGFKMHARGWRSIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYTGRLKWLERLAYINTTVYPITSIPLLAYCTLPAICLLTGKFIIPEISTLASLWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGVDTNFTVTSKASDEGGDFAELYIIKWTALLIPPTTLLIINIVGVVAGISYAISTGYRSWGPLF

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
241			14	85	0.993533
245		85	14		0.993533
247			14	85	0.993533
248	14	85			0.993533
249		14		85	0.993533
250	85	14			0.993533
251	85			14	0.993533
252	85			14	0.993533
253	85		14		0.993533
255	85	14			0.993533
256	85			14	0.993533
258		85		14	0.993533
261		14		85	0.993533
379		27	63	9	1.0
380	27	72			1.0
457	84	15			0.999986
460		15		84	0.999986
461			15	84	0.999986
465		15	84		0.999986
474			15	84	0.999986
476		15	84		0.999986
477	15		84		0.999986
478	84	15			0.999986
525	86	13			0.999973
527			86	13	0.999973
530		15	84		0.999986
533			84	15	0.999986
669	76		23		1.0
671		23		76	1.0
672	76	23			1.0
674	76			23	1.0
676		76	23		1.0
677		23	76		1.0
678	76			23	1.0
682	8	16		75	0.99999
684		16		83	0.999991
685	18	9	72		0.999994
783		10		90	0.90298
785		10	90		0.90298
790		10		90	0.90298
792			90	10	0.90298
796		10	90		0.90298
800		10	90		0.90298
801	10			90	0.90298
808	84	15			0.999986
809			15	84	0.999986
811		15		84	0.999986
814			18	81	0.999994
815	18			81	0.999994
816		18	81		0.999994
821			20	80	0.999996
822		20		80	0.999996
824			20	80	0.999996
825		80		20	0.999996
828	90	10			0.90298
830		11	77	11	0.968132
831	11	11	77		0.968132
832	11			88	0.923564
878	10	90			0.90298
885		10		90	0.90298

SSRs (tot: 2)

Start position	End position	Sequence	Length
33	46	AAG AAG AAG AAG AA	14
882	893	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain