SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7951

Length: 442 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene7951
CGTCGTGACCTTGGCTGTCACTCAATTGTTATAGCTGATCGAAGACGGGTGAATCAGAAGAAGTAGCGATTGAAATCTAATCGATTACAGAATGGAAGACGCGGGTGGAAGAAGGATATTAGTTGCAGTGGACGAAAGCGAAGAGAGCATGTATGCTTTAAAGTGGGCTGTTGATTATCTACATCTTGATTCCACTGACACTCTCATCTTGTGCCATTCCAAGCGCCTTCTCGGAGCTTATGAAGGGCTCGGAGGTCCTGGCTTTGTACTTACACCGGAAGTTGTAATAGCTTTGGAGAAACATCAAGACCATGTTGCCGAGACCGTCATGCAGAAGGCGAGGGATATCTGCAGCGGGACTCCGGCAAAAGTGGAGGAGAAGATTGTAAAAGGAGATGCGAGAGATGCACTGTGTGATGCAGTGAAGAAGGTAGGGCTTCGC

Ace file of the UniGene uagpf_v2_unigene7951 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5624	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	USP-like protein [Astragalus sinicus]	-	-	2.0e-33	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	universal stress protein	-	-	1.39247e-41	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	1.39247e-41	66%

Source	InterPros	Term	Type	Identity
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ2

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 117 - 164

Fln protein: MEDAGGRRILVAVDESEESMYALKWAVDYLHLDSTDTLILCHSKRLLGAYEGLGGPGFVLTPEVVIALEKHQDHVAETVMQKARDICSGTPAKVEEKIVKGDARDALCDAVKKVGLR

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTATAGCTGATCGAAGACGGGTGAATCAGAAGAAGTAGCGATTGAAATCTAATCGATTACAGA_-_ATGGAAGACGCGGGTGGAAGAAGGATATTAGTTGCAGTGGACGAAAGCGAAGAGAGCATGTATGCTTTAAAGTGGGCTGTTGATTATCTACATCTTGATTCCACTGACACTCTCATCTTGTGCCATTCCAAGCGCCTTCTCGGAGCTTATGAAGGGCTCGGAGGTCCTGGCTTTGTACTTACACCGGAAGTTGTAATAGCTTTGGAGAAACATCAAGACCATGTTGCCGAGACCGTCATGCAGAAGGCGAGGGATATCTGCAGCGGGACTCCGGCAAAAGTGGAGGAGAAGATTGTAAAAGGAGATGCGAGAGATGCACTGTGTGATGCAGTGAAGAAGGTAGGGCTTCGC

Fln Alignment:

Contig7951___RRILVAVDESEESMYALKWAVDYLHLDSTDTLILCHSKRLLGAYEGLGGPGFVLTPEVVIALEKHQDHVAETVMQKARDICSGTPAKVEEKIVKGDARDALCDAVKK
B8LPQ2_______________RGILVAIDDTQESLNALQWVLNNL-FTSQDRIILIHAQRNPNSLLASGSPGFMVPVDVLKIFENDIKKSTEKILARATEICKAKNLTPETEVHTGDAREVICNAAKK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
230		85		14	0.993533
236	85	14			0.993533
237		14		85	0.993533
249	14			85	0.993533
250		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain