SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7916

Length: 535 nt

UniGene Fasta

>uagpf_v2_unigene7916
CGTCGTGACCTTGGCTGTCACTCACGTTGCATATAGAGGATGTTTTCTGATTGTTACATACGACGTGATTTGTACTTTAGCGCTTATTGCATTTGTTAGGATCACTATTTCGGACGGAGATTACTTTTAGGGCTTCTCGAAGCAGCGCTAGTCCACATCGATCAAGTCCATCATCTTGTTCAAGCAGTGTAAACACCTTTCTCAGGACAAGGGCATCCTCAGGTCCAAGTGCTAGTGCGAGTCCGACTTTGCGATTTCTAACACCTTCAGTCAGGCCATCTACACCAACATCCAAGCCTTCCACACTGTCCATAAGGTTCCCAACTCCGACACTTAGAAGATCTAGCCCTGGATCTGGTGGTTCAGTGGCAAGGGGTGCATCTTCATCTGGAAAAGCAAACCGTGCTACGCCCTCCTCCCCAAAGCTACAGTCTTGGCATTAAAACATTCCTGGATTCACAGCAGAGCCCCCTCCAAAGCTTCTTACATCAATAAGTGATCGGCCTATATCTAGGACAAGAGGTTCAGTTCCTGC

Ace file of the UniGene uagpf_v2_unigene7916

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10173	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	53%
Blast2go	uncharacterized protein	-	-	5.75005e-10	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.75005e-10	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Somatotropin hormone, conserved site	IPR018116	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HTB2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 778 aas, your sequence is shorter than subject: 177 - 1057

Fln protein: S*PWLSLTLHIEDVF*LLHTT*FVL*RLLHLLGSLFRTEITFRASRSSASPHRSSPSSCSSSVNTFLRTRASSGPSASASPTLRFLTPSVRPSTPTSKPSTLSIRFPTPTLRRSSPGSGGSVARGASSSGKANRATPSSPKLQSWH*NIPGFTAEPPPKLLTSISDRPISRTRGSVP

Protein Length: 178

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTTGCATATAGAGGATGTTTTCTGATTGTTACATACGACGTGATTTGTACTTTAGCGCTTATTGCATTTGTTAGGATCACTATTTCGGACGGAGATTACTTTTAGGGCTTCTCGAAGCAGCGCTAGTCCACATCGATCAAGTCCATCATCTTGTTCAAGCAGTGTAAACACCTTTCTCAGGACAAGGGCATCCTCAGGTCCAAGTGCTAGTGCGAGTCCGACTTTGCGATTTCTAACACCTTCAGTCAGGCCATCTACACCAACATCCAAGCCTTCCACACTGTCCATAAGGTTCCCAACTCCGACACTTAGAAGATCTAGCCCTGGATCTGGTGGTTCAGTGGCAAGGGGTGCATCTTCATCTGGAAAAGCAAACCGTGCTACGCCCTCCTCCCCAAAGCTACAGTCTTGGCATTAAAACATTCCTGGATTCACAGCAGAGCCCCCTCCAAAGCTTCTTACATCAATAAGTGATCGGCCTATATCTAGGACAAGAGGTTCAGTTCCTGC

Fln Alignment:

Contig7916___NRATPSSPKLQSWH*NIPGFTAEPPPKLLTSISDRPISRTRGSVP
B9HTB2_______________SRGNSASPKIRAWQSNIPGFSSEAPPNLRTSLADRPASYVRGSSP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
16		40		60	1.0
21		60	40		1.0
23		60	40		1.0
26		40	60		1.0
30		60	40		1.0
31	60	40			1.0
33	60		40		1.0
35	60	40			1.0
36	40		60		1.0
37	60	40			1.0
38			60	40	1.0
39		40	60		1.0
62	40		60		1.0
80	40		60		1.0
99			60	40	1.0
104	60		40		1.0
112	40		60		1.0
115		60		40	1.0
146		57		42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
16		40		60	1.0
21		60	40		1.0
23		60	40		1.0
26		40	60		1.0
30		60	40		1.0
31	60	40			1.0
33	60		40		1.0
35	60	40			1.0
36	40		60		1.0
37	60	40			1.0
38			60	40	1.0
39		40	60		1.0
62	40		60		1.0
80	40		60		1.0
99			60	40	1.0
104	60		40		1.0
112	40		60		1.0
115		60		40	1.0
146		57		42	1.0

Position	A %	C %	G %	T %	Probability
16		40		60	1.0
21		60	40		1.0
23		60	40		1.0
26		40	60		1.0
30		60	40		1.0
31	60	40			1.0
33	60		40		1.0
35	60	40			1.0
36	40		60		1.0
37	60	40			1.0
38			60	40	1.0
39		40	60		1.0
62	40		60		1.0
80	40		60		1.0
99			60	40	1.0
104	60		40		1.0
112	40		60		1.0
115		60		40	1.0
146		57		42	1.0

Position	A %	C %	G %	T %	Probability
16		40		60	1.0
21		60	40		1.0
23		60	40		1.0
26		40	60		1.0
30		60	40		1.0
31	60	40			1.0
33	60		40		1.0
35	60	40			1.0
36	40		60		1.0
37	60	40			1.0
38			60	40	1.0
39		40	60		1.0
62	40		60		1.0
80	40		60		1.0
99			60	40	1.0
104	60		40		1.0
112	40		60		1.0
115		60		40	1.0
146		57		42	1.0