SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7900

Length: 1097 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7900

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16943	15/17

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SFK8_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	protein	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Nucleoside diphosphate kinase	IPR001564	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9D1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 253 - 347

Fln protein: S*PWLSLKFSTHGSLASILHGPNAQVLDWDIRYRVAVGTAEGLLYLHEGCQRRIIHRDIKASNILLVVTLAVTQISDFGLAKWLPKQWTHHTVTPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRQPIDSSQQSLVMWAKPFIESRNIRGLADPSLGDKYNVHQMSCVAFTASLCVQQAPQLRPCMGHVLQLLSSEEENLQSPEHWSTPLSPSPFLEESSDTEEYTSTRYLSDLHRHRQVALEF*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTCCACTCATGGAAGCTTAGCATCAATACTTCATGGCCCAAACGCTCAAGTTCTTGACTGGGATATTCGGTACAGAGTAGCTGTTGGCACAGCTGAAGGTCTTCTTTACCTTCATGAGGGATGTCAAAGACGCATCATTCATAGAGATATTAAAGCATCCAACATTTTACTCGTCGTGACCTTGGCTGTCACTCAAATTTCGGATTTTGGACTAGCAAAATGGCTTCCTAAGCAATGGACCCACCACACAGTGACACCTATAGAAGGCACTTTTGGTTATCTTGCACCAGAGTATTTTATGCATGGGATTGTAGATGAGAAGACGGATGTTTTTGCATTTGGGGTGTTGCTCCTGGAGCTCATTACCGGACGTCAGCCAATTGACTCTTCCCAGCAAAGTCTTGTGATGTGGGCAAAGCCGTTTATCGAAAGTAGAAACATCAGGGGGCTTGCGGATCCCTCCCTCGGTGATAAATACAATGTTCATCAGATGAGTTGTGTGGCCTTTACAGCTTCTTTATGTGTTCAGCAGGCTCCCCAACTTCGCCCATGTATGGGTCATGTTTTGCAACTTCTTAGTAGCGAAGAAGAGAACCTGCAGTCCCCAGAACACTGGAGCACGCCACTTTCGCCGTCACCATTCTTGGAGGAGTCTTCCGATACAGAGGAATATACATCCACAAGGTATCTTAGTGATCTACATCGTCATCGACAGGTTGCTTTGGAGTTTTAG___AATTGGTCCTCTTCTCATTAGTGTGTTTATATCGTGACTCTTTTACAGTCTCTAATCTAACTAGTTTTCAGAAAAATGCTCTACCAAAAAATGAGATATATTGTAATCCTGAGACTCTCCAATAGTTTTGACACGAGGCGTTCAGTTTTTTGAACATTGTACATAAGGCTTGTAGTTGTACACTAGATTTCAACCTACTACTCAGTCCATCATTTGTCCTCAAGAATTGGTCACCATTTCAATGTGACTGGTTCATCGTGAGTGGAAATGTATTTCTGCAGGTCTGTTAAATTATATATATTGCTTTTGGTACTCGACATAAGTGGACGGAGTCCA

Fln Alignment:

Contig7900___LSLKFSTHGSLASILHGPNAQVLDWDIRYRVAVGTAEGLLYLHEGCQRRIIHRDIKASNILLVVTLAVTQISDFGLAKWLPKQWTHHTVTPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRQPIDSSQQSLVMWAKPFIESRNIRGLADPSLGDKYNVHQMSCVAFTASLCVQQAPQLRPCM
D5A9D1_______________LIFHFSVHGSLDSLLHGTKTRVLEWSIRYKVAIGTARGLHYLHKCCQRRIIHRDIKSSNVLLGKDFE-PQISDFGLSKWLPRQWTHHSVTPIEGTFGYLAPEYFLHGIVDEKTDVFSFGVLLLEIISGRRPIDASEQNILSWAKPLMESGNIHELVDPQLRGQYDIHQMQRMVLTASLCVRHSAIWRPSM

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
203	40		60		1.0
204		40		60	1.0
205		60		40	1.0
207	40			60	1.0
210	40	60			1.0
211		60		40	1.0
214			60	40	1.0
217	40			60	1.0
652	75			25	0.996473
655		75		25	0.996473
656		75	25		0.996473
659		25		75	0.996473
662		75	25		0.996473
665		75		25	0.996473
714	83		16		0.994512
715	83			16	0.994512
716		16	83		0.994512
720		16		83	0.994512
724	83		16		0.994512
728	83	16			0.994512
729	16			83	0.994512
732	83	16			0.994512
733	16	83			0.994512
740	75	8	16		0.99999
742		75		8	0.99999
747		18	72	9	0.999994
748			81	18	0.999994
750		9	18	72	0.999994
754		9	18		0.999994
756		18		81	0.999994
757	18		81		0.999994
758		18	81		0.999994
759	81			18	0.999994
760		18	81		0.999994
761	18			9	0.999994
1059	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain