SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7873

Length: 838 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene7873 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21249	3/11
SustainPine v2.0	sp_v2.0_unigene36208	6/11
SustainPine v2.0	sp_v2.0_unigene36594	2/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin-regulated protein [Phaseolus vulgaris]	-	-	8.0e-27	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	saur family protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	calmodulin binding	GO:0005516	Molecular Function	0.0	63%
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin responsive SAUR protein	IPR003676	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
299			66	16	0.988813
333	33			66	1.0
334			33	66	1.0
336		66	33		1.0
337	33		66		1.0
341		33	66		1.0
342		33	66		1.0
343	33			66	1.0
349		33	66		1.0
351		33	66		1.0
352		66	33		1.0
353	33	66			1.0
378		75		25	0.996473
379		75	25		0.996473
380	25			75	0.996473
381		75	25		0.996473
382		75		25	0.996473
383			25	75	0.996473
386	50		50		1.0
389		25		75	0.996473
390	25	75			0.996473
398			75	25	0.996473
489		80	20		0.995493
490	20			80	0.995493
492			80	20	0.995493
493	80		20		0.995493
497			20	80	0.995493
502	80			20	0.995493
503		20	80		0.995493
504	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain