SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7871

Length: 1036 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7871

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15041	34/36

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RN12_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	membrane associated protein phosphatase 2c	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	82%
Blast2go	maintenance of meristem identity	GO:0010074	Biological Process	82%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	82%
Blast2go	phospholipid binding	GO:0005543	Molecular Function	82%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
98		11	11	77	0.968132
99			11	88	0.923564
101		11		88	0.923564
102			11	88	0.923564
103	88			11	0.923564
105	11			88	0.923564
110			11	88	0.923564
117	88	11			0.923564
119		11	88		0.923564
120	11		88		0.923564
141	81		18		0.999994
292			83	16	0.999991
297	83	16			0.999991
298	83			16	0.999991
300	83		16		0.999991
301			16	83	0.999991
303	83		16		0.999991
305		16	83		0.999991
341	90	10			0.90298
343	90			10	0.90298
344	90	10			0.90298
348		10		90	0.90298
349	90			10	0.90298
353	90	10			0.90298
354			90	10	0.90298
357	10		90		0.90298
358		10	90		0.90298
359	90			10	0.90298
360		10	90		0.90298
361	10		90		0.90298
519		10	90		0.90298
520	10		90		0.90298
524	81			18	0.999994
616	90		10		0.90298
617			90	10	0.90298
618	90	10			0.90298
620		90		10	0.90298
621	90		10		0.90298
623	90	10			0.90298
629			10	90	0.90298
811	90			10	0.90298
812	90	10			0.90298
814		11		88	0.923564
854	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain