SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7826

Length: 422 nt

UniGene Fasta

>uagpf_v2_unigene7826
CGTCGTGACCTTGGCTGTCACTCTATCTTCAGAATATCTTACCATCCATTCTCGTCAGTTGCTGCTGCCATGGCTGCTCTCGTGCATGGTATTTCATTCACGAGCTTCAAGAATGGAAATTACAGCGGGACACGCTCGCTCTTTAATGGAAGCTACACTGGGACACCCTCGATCTTTCTCAGACTTACTCCGTATCCTACCTTGTCTCTTCACAGGAGAAATATCAGGGTCAGAGCAGCAGAAACAGACACAAATCCAGTTGAGTCTACAACTCCAGAAAAGGCACCAGCGAAAAATGAAGGATCATCTAGCCTCAATCAACTTCTTGGAATAAAAGGAGCAGCACAAGAAACTGATAAATTGAAGATTCGCTTGCAACTCACAAAGCCAGTTACTTGGGCACCACTGATCTGGGGATAGTC

Ace file of the UniGene uagpf_v2_unigene7826

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14362	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	chlorophyll synthase [Arabidopsis thaliana] sp\|Q38833.1\|CHLG_ARATH RecName: Full=Chlorophyll synthase, chloroplastic; AltName: Full=Polyprenyl transferase; AltName: Full=Protein G4; Short=AtG4; Flags: Precursor gb\|AAA96740.1\| putative chlorophyll syntheta	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	chlorophyll synthase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chlorophyll synthase.	EC:2.5.1.62	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	bacteriochlorophyll biosynthetic process	GO:0030494	Biological Process	87%
Blast2go	chlorophyll synthetase activity	GO:0046408	Molecular Function	87%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT82

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 270 aas, your sequence is shorter than subject: 117 - 388

Fln protein: MAALVHGISFTSFKNGNYSGTRSLFNGSYTGTPSIFLRLTPYPTLSLHRRNIRVRAAETDTNPVESTTPEKAPAKNEGSSSLNQLLGIKGAAQETDKLKIRLQLTKPVTWAPLIWG*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCTATCTTCAGAATATCTTACCATCCATTCTCGTCAGTTGCTGCTGCC_-_ATGGCTGCTCTCGTGCATGGTATTTCATTCACGAGCTTCAAGAATGGAAATTACAGCGGGACACGCTCGCTCTTTAATGGAAGCTACACTGGGACACCCTCGATCTTTCTCAGACTTACTCCGTATCCTACCTTGTCTCTTCACAGGAGAAATATCAGGGTCAGAGCAGCAGAAACAGACACAAATCCAGTTGAGTCTACAACTCCAGAAAAGGCACCAGCGAAAAATGAAGGATCATCTAGCCTCAATCAACTTCTTGGAATAAAAGGAGCAGCACAAGAAACTGATAAATTGAAGATTCGCTTGCAACTCACAAAGCCAGTTACTTGGGCACCACTGATCTGGGGATAGTC

Fln Alignment:

Contig7826___MAALVHGISFTSFKNGNYSGTRSLFNGSYTGTPSIFLRLTPYPTLSLHRRNIRVRAAETDTNPVESTTPEKAPAKNEGSSSLNQLLGIKGAAQETDKLKIRLQLTKPVTWAPLIWG
C0PT82_______________MAALVHGISLTGFKNGSYSGTRSLFKGSYSGTPSLLLRPTPNPILSLHRRNIRVRAAETDTNQVESTSPEKAPAKNEGSSNLNQLLGIKGAAQETDKLKIRLQLTKPVTWAPLIWG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
115		14	85		0.993533
117	85			14	0.993533
118	85	14			0.993533
119	85		14		0.993533
121			14	85	0.993533
124	85	14			0.993533
125			85	14	0.993533
126		85		14	0.993533
130	85			14	0.993533
134			85	14	0.993533
136	14			85	0.993533
290	20	80			0.995493
311	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain