SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7823

Length: 1035 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene7823

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1329	51/53
SustainPine v2.0	sp_v2.0_unigene64674	1/53

Source	Descriptions	Term	Type	Identity
AutoFact	F-box/LRR-repeat protein 15 [Arabidopsis thaliana] sp\|Q9SMY8.2\|FBL15_ARATH RecName: Full=F-box/LRR-repeat protein 15 gb\|AEE86191.1\| F-box/LRR-repeat protein 15 [Arabidopsis thaliana]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	f-box lrr-repeat protein 15-like	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	organ formation	GO:0048645	Biological Process	73%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	73%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Mob1/phocein	IPR005301	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

SNPs (tot: 93)

Position	A %	C %	G %	T %	Probability
54	40	60			1.0
56	40			60	1.0
57		60		40	1.0
58	40			40	1.0
64		16		83	0.994512
66		83		16	0.994512
197	85	14			0.993533
220	85	14			0.993533
223		14		85	0.993533
244		85	14		0.993533
249	14		85		0.993533
265	14		85		0.993533
289	85		14		0.993533
334	80			20	0.995493
354		16		83	0.994512
356	83			16	0.994512
357			16	83	0.994512
359		16		83	0.994512
363		83		16	0.994512
364			16	83	0.994512
366	83	16			0.994512
368			16	83	0.994512
370		16	83		0.994512
372	83	16			0.994512
373	83			16	0.994512
376	16		83		0.994512
454		28	71		1.0
457		28		71	1.0
458			28	71	1.0
459			71	28	1.0
462		28		71	1.0
463	71	28			1.0
465	71			28	1.0
466	71		28		1.0
469	71			28	1.0
473	87	12			0.992554
474		25	75		1.0
475	75			25	1.0
476		25		75	1.0
477	12		87		0.992554
480		12	87		0.992554
482	87			12	0.992554
483	87			12	0.992554
485			12	87	0.992554
487	87		12		0.992554
495	85	14			0.993533
498	87		12		0.992554
501		87		12	0.992554
502			12	87	0.992554
504		12		87	0.992554
505		12		87	0.992554
508	87		12		0.992554
509	87		12		0.992554
512	87		12		0.992554
515	87	12			0.992554
517		12		87	0.992554
523	60	40			1.0
524	60		25	15	1.0
526		25	75		1.0
530	25			75	1.0
532		85		15	1.0
534			75	25	1.0
535	75		25		1.0
537		25		75	1.0
540		25	75		1.0
542		26	73		1.0
544	5	10		84	0.999846
545	10			89	0.999919
554	89		10		0.999919
557		10		89	0.999919
588	86	13			1.0
597			90	9	0.999842
623	87	8		4	0.999414
625			87	12	1.0
626	4	12	83		1.0
627	91		8		0.999766
629			8	91	0.999766
631		12		87	1.0
634			8	91	0.999766
635			8	91	0.999766
637	91			8	0.999766
639	91	8			0.999766
641		8	91		0.999766
665	92	8			0.999718
669	88			4	0.999262
673		8		92	0.999718
674	89	10			1.0
678	89		10		1.0
679	3		6	89	0.998304
680	93	6			0.999453
682			6	93	0.999453
684		6	3	89	0.998304
692		6		93	0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain