SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene7772

Length: 532 nt

UniGene Fasta

>uagpf_v2_unigene7772
CGTCGTGACCTTGGCTGTCACTCAATCCTACTTGACAAAAATTACAATGCCAAAGTGTCTGATTTTGGGCTGGCAAAGCTTGGTTCTGAAAAATTGAATGGTGAAATCTCCACGTCGTGACCTTGGCTGTCACTCAACGGGATATGTTGCCCCAGAGTATGCTTTGACAGGACACCTGACGACAAAATCAGATGTTTACAGCTTTGGTGTTGTGCTTTTAGAGCTTTTGACAGGCCGTGTTCCTGTAGACATGAAGAGGCCTCCTGGACAAGGCATACTCGTCTCTTGGGCTCTTCCATACCTCACTGACAGAGAGAAGGTTACACAGCTGGTCGATCCTGTTCTGGAAGGGCAGTACTCAAAGAAGGAACTAATACAGGTTGCAGCCATTGCAGCAATGTGTGTTCAATCAGAAACACAAGATTATCGACCTCTGATGACTGATGTAGTTCAGTCACTGATTCCCCTTGTGAAACAGCATACTGGTTCCAGAGTGACAAGCTCTCCCAAATTCCGCCACCATATTGTCACT

Ace file of the UniGene uagpf_v2_unigene7772

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5135	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AEE79818.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein kinase family protein	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	67%
Blast2go	ATP binding	GO:0005524	Molecular Function	67%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA69

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 29 aas, your sequence is shorter than subject: 177 - 587

Fln protein: VVTLAVTQSYLTKITMPKCLILGWQSLVLKN*MVKSPRRDLGCHSTGYVAPEYALTGHLTTKSDVYSFGVVLLELLTGRVPVDMKRPPGQGILVSWALPYLTDREKVTQLVDPVLEGQYSKKELIQVAAIAAMCVQSETQDYRPLMTDVVQSLIPLVKQHTGSRVTSSPKFRHHIVT

Protein Length: 178

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTACTTGACAAAAATTACAATGCCAAAGTGTCTGATTTTGGGCTGGCAAAGCTTGGTTCTGAAAAATTGAATGGTGAAATCTCCACGTCGTGACCTTGGCTGTCACTCAACGGGATATGTTGCCCCAGAGTATGCTTTGACAGGACACCTGACGACAAAATCAGATGTTTACAGCTTTGGTGTTGTGCTTTTAGAGCTTTTGACAGGCCGTGTTCCTGTAGACATGAAGAGGCCTCCTGGACAAGGCATACTCGTCTCTTGGGCTCTTCCATACCTCACTGACAGAGAGAAGGTTACACAGCTGGTCGATCCTGTTCTGGAAGGGCAGTACTCAAAGAAGGAACTAATACAGGTTGCAGCCATTGCAGCAATGTGTGTTCAATCAGAAACACAAGATTATCGACCTCTGATGACTGATGTAGTTCAGTCACTGATTCCCCTTGTGAAACAGCATACTGGTTCCAGAGTGACAAGCTCTCCCAAATTCCGCCACCATATTGTCACT

Fln Alignment:

Contig7772___GYVAPEYALTGHLTTKSDVYSFGVVLLELLTGRVPVDMKRPPGQGILVSWALPYLTDREKVTQLVDPVLEGQYSKKELIQVAAIAAMCVQSETQDYRPLMTDVVQSLIPLVKQHTGSRVTSS
D5AA69_______________GYLAPEYLFDGKLTEKSDVYAFGVVLLELITGRKPVDKSMPAGCQSLVTWAKPQLTDRSKLPTIVDPMIKETMHLKHLYQVAAVAVLCVQNE-PDYRPLITDVAKSLMPLVPVELGGALKNA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
416	20		80		0.995493
417		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain